Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.4 bits (111), Expect = 1e-10
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 28  RAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSR 87
           R  LR  L R  AE ED+VQD ++ V N R  +   + + A+   +A+    D  +    
Sbjct: 19  RLALRITLDR--AEAEDVVQDTMIRVWNKRDEWSQFESVEAYCLIVAKNLAIDRSQKKEA 76

Query: 88  RDAR--HDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETA 145
           ++     ++ ++        ++   E    + +L+ +LPE+QRL +    +EG S ++ A
Sbjct: 77  QNVEITPEMEEEPDANSPYDQLVHDEKMNIINRLVNELPEKQRLIMQLRDIEGESYKKIA 136

Query: 146 QLTGLSSSAVKVGIHR 161
            L  L+   VKV + R
Sbjct: 137 TLLNLTEEQVKVNLFR 152