Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 9/139 (6%)

Query: 42  IEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDA------RHDVL 95
           +ED+VQ+V ++V   + T+   + LT ++          ++R+    D+      + +  
Sbjct: 45  VEDLVQEVFISVWEGKRTFSDSRELTNYLYRACYNNALLYIRNHQIHDSILNGLPQEEDF 104

Query: 96  DDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAV 155
           +D+  L+A++  E  EA R L   +++LP  QR  I+ +++EG S +E A   G+S + V
Sbjct: 105 EDEEMLYALTVKE--EAIRQLYFYIEELPAEQR-RIILLRIEGHSWDEIASRLGVSINTV 161

Query: 156 KVGIHRGLKALSRLIGGAN 174
           K    R  K L   +  ++
Sbjct: 162 KTQKSRSYKFLREKLANSS 180