Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 196 a.a., putative RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 15  AYQDFLGTLALHVRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIA 74
           A+++     A   + F    LS   A  +D +Q++ L V+ AR +YQ  +  + W  A+A
Sbjct: 28  AFEELYCRYAPRFKGFFMRMLSADGALADDFLQELFLRVYEARGSYQHGKQFSTWAFAMA 87

Query: 75  RYKLADHLRSVSRRDARH-DVLDD---------DAQLFAVSEVESAE----ASRDLTKLL 120
            Y L        + + RH D++D+         +   ++  E E A       R L K+L
Sbjct: 88  -YNLC-------KNEYRHRDIVDEYRLQQSYTNEEDSYSSLEFEVAHDRQVFDRQLKKVL 139

Query: 121 KQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGIHRGLKALSRLIGGAN 174
             L + QR        E L V+E AQ+       VK  ++  LK L R +   N
Sbjct: 140 AGLTDEQRAAYTLRYEEELPVQEIAQILCCPEGTVKSRLYYTLKVLQRSLSDYN 193