Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 45.4 bits (106), Expect = 6e-10
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 11/127 (8%)

Query: 41  EIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRS----VSRRDARHDVLD 96
           + E++VQD  L +   +      Q   A++ +  +++  + LRS    V RR    D+++
Sbjct: 41  DAENIVQDFFLYLWERKEILPELQQPDAYLFSAVKHRCLNFLRSQLSIVDRRQPLSDIME 100

Query: 97  DD-------AQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTG 149
            +        QL   S++   E  + + + +  LPER R   V  KL+G+   E A+  G
Sbjct: 101 QEFKLKLYSLQLLDDSQMSIDEVEKQICRAIDSLPERCREIFVMSKLKGMKYREIAESLG 160

Query: 150 LSSSAVK 156
           +S + V+
Sbjct: 161 ISQNTVE 167