Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 45.8 bits (107), Expect = 4e-10
 Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 9/128 (7%)

Query: 43  EDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVSRRDARHDVLD-DDAQL 101
           +D+ QD  +  +    +++     + W+  IA     D++RS      R ++ D D  ++
Sbjct: 49  DDLAQDTFIKAYTNLASFRNLSSFSTWLYRIAYNIFYDYIRS------RKEMADLDTREV 102

Query: 102 FAVSEVESAEASR--DLTKLLKQLPERQRLPIVHVKLEGLSVEETAQLTGLSSSAVKVGI 159
            AV+  E A   +  D+ + LK L E +R  I    +E +S+++ A +TG+ +  VK  +
Sbjct: 103 DAVNCTEQANIGQTMDVYQSLKSLKEVERTCITLFYMEDVSIDKIAGITGIPAGTVKSHL 162

Query: 160 HRGLKALS 167
            RG + L+
Sbjct: 163 SRGKEKLA 170