Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Burkholderia phytofirmans PsJN

 Score = 53.9 bits (128), Expect = 1e-12
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 27  VRAFLRSRLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRSVS 86
           +R + R+ ++ R    +D+VQD L         +QP   L AW+  I     A+  R  S
Sbjct: 14  LRRYARALINNRDLA-DDLVQDTLERALGRTGMFQPGTDLRAWLFTIMHNVFANQARKAS 72

Query: 87  RRDARHDVLDDDA---QLFAV-SEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVE 142
            R A H  +DD++     FAV SE   +   RDL   L++LP  QR  ++ V LE +S  
Sbjct: 73  AR-AVHVAVDDESVSESEFAVPSEQTRSLEMRDLDYALQRLPMEQREVVLLVGLEEMSYA 131

Query: 143 ETAQLTGLSSSAVKVGIHRGLKALSRLIGG 172
           + A    +    V   + RG + L  L+ G
Sbjct: 132 DVALALNIPLGTVMSRLSRGRERLRALMAG 161