Pairwise Alignments

Query, 178 a.a., putative RNA polymerase sigma factor from Pseudomonas putida KT2440

Subject, 177 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score = 53.1 bits (126), Expect = 3e-12
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 26  HVRAFLRS-RLSRRPAEIEDMVQDVLLAVHNARHTYQPQQPLTAWVQAIARYKLADHLRS 84
           H R +  S RLS + ++ E++ Q+  + V      ++ +   + W+ +I   +    +R 
Sbjct: 37  HPRVYALSLRLSGQASQAEEITQECFILVWQKLPQFRGESQFSTWLHSICVNQALSFIRK 96

Query: 85  VSRRDARHDVLDDDAQLFAVSEVESAEASRDLTKLLKQLPERQRLPIVHVKLEGLSVEET 144
                AR   ++ D +        + E  + L KL+ +LPER R+  V   +EG   EE 
Sbjct: 97  QKSFWARFIPMESDDE-----HSSADEHYQGLDKLILRLPERARIVFVLCAIEGYQHEEI 151

Query: 145 AQLTGLSSSAVKVGIHRGLKALSRLI 170
           AQL G++    K   HR  + L  ++
Sbjct: 152 AQLLGIAVGTSKTQYHRAKQLLQEML 177