Pairwise Alignments

Query, 353 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 352 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  254 bits (648), Expect = 3e-72
 Identities = 135/352 (38%), Positives = 209/352 (59%), Gaps = 1/352 (0%)

Query: 1   MAKLDRYIGQSVLLAILAVLGIILGLASLFAFIDEMGDLS-DTYTVMEAGNFVLLTAPRR 59
           M  LD YI + +L      L ++ GL+ +  ++D++  +   TYT+M+AG +VL   PR 
Sbjct: 1   MKILDLYIARVLLSTSALCLLVLTGLSGIIKWVDQLRLVGRGTYTMMDAGIYVLFLVPRD 60

Query: 60  LYEMLPMAALIGCLIGLGSLASSSELTIMRAAGVSIGRIVWAVMKPMLVLMLVGLLIGEY 119
           +    PMA L+G LIG+G LAS+SEL +M+A+G+S  +I  + MK  + LML+ + +GE+
Sbjct: 61  IEMFFPMAVLLGALIGMGMLASNSELVVMQASGMSRLQITLSAMKTAVPLMLMVMALGEW 120

Query: 120 VAPVTENKAQADRSLAQGGGEAQSSKRGMWHRQGEEYVHINAVQPDGLLLGVTRYRFDSE 179
            AP+ E KA   +++   GG    S RG+W + G+ +V+I  V     L  +T Y+F+SE
Sbjct: 121 GAPIAEQKANELQAIKLSGGSLIKSHRGIWAKDGDLFVNIGEVADIDKLNNITLYKFNSE 180

Query: 180 RKIVTSSFARRAQYQNDHWLLADVRTTYFRGDHTEVVNAPEERWDVSLTPELLNTVILAP 239
            K+     A  A +  D WLL DV+ T    D  ++ +  E+ W  SLTP+ L+ V + P
Sbjct: 181 LKLTNVVHAESALFSKDSWLLTDVKRTDLSYDEVKLEHLDEDVWRSSLTPDKLSVVSVKP 240

Query: 240 ESLSITGLWDYIHYLSDQGLNNSRYWLAFWTKVLQPMVTAALVLMAISFIFGPLRSVTLG 299
           E+LSI GL  Y+ YL+    + SRY LA W KV+QP+    ++L+A+SF+FGPLR+VT+G
Sbjct: 241 EALSIRGLMGYLEYLNSNSQDPSRYELALWRKVMQPVTVGVMMLVALSFVFGPLRTVTMG 300

Query: 300 QRVFTGVLVGFVFRIGQDLLGPSSQVFGFPPLLAVVIPAGICALAGVWLLRR 351
            RV  GV+ GF F I  ++ GP S V+  P  +  + P+ +      + +RR
Sbjct: 301 ARVLLGVVAGFSFYISNEIFGPMSIVYELPAYVGAMAPSLLFTGVAFYFIRR 352