Pairwise Alignments

Query, 317 a.a., Ribosomal RNA large subunit methyltransferase F from Pseudomonas putida KT2440

Subject, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

 Score =  318 bits (815), Expect = 1e-91
 Identities = 159/314 (50%), Positives = 214/314 (68%), Gaps = 11/314 (3%)

Query: 5   KPTLHPRNRHQGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKAQY 64
           K  LHPRNRH+G+YDFP+LIK  P+L    + NP G+ +I+FA+P +V++ N+ALL   Y
Sbjct: 46  KSGLHPRNRHRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHY 105

Query: 65  GIQHWDIPADYLCPPIPGRADYIHVAADLLADDNAGDVPRGAQVRALDIGVGANCIYPLL 124
           G+ +WDIP  +LCPPIPGRADYIH  ADLL   N       +QVRALDIGVGANCIYP++
Sbjct: 106 GVTYWDIPEGFLCPPIPGRADYIHRVADLLLKGN--PQLNHSQVRALDIGVGANCIYPIV 163

Query: 125 GYSDYRWRFLGSDIDPVALASAKAIVQANG-LGKAITLRQQANRAHILSGLLQEGERFDL 183
           G ++Y W ++GSD+DPV++  A  IVQ+N  L   I  R Q N  HI +G++   ER+ +
Sbjct: 164 GVTEYGWSWVGSDVDPVSIQQASLIVQSNSKLQGHIECRLQKNSQHIFNGIIGANERYTV 223

Query: 184 TLCNPPFHASRDEATRGSQRKWKNL-GKQDPKRKLPV-------LNFGGQNNELWCEGGE 235
           T CNPPFHAS  +A +G+QRK  NL   Q  K +L         LNFGGQ  ELWC GGE
Sbjct: 224 TTCNPPFHASLADAQQGTQRKLTNLQANQRKKGRLATPTLSHSRLNFGGQKAELWCPGGE 283

Query: 236 IRFVTQLIGESVQYAERVLWFTSLVSKASNLPGIEAALKKSGAKAVRIIEMGQGQKQSRM 295
             F+ ++  ES Q+A++VLWF +L+SK  N+ G++  L+K GA+++ +IEM QGQK SR 
Sbjct: 284 AAFIGKMAVESQQFAQQVLWFRTLISKGDNVRGMKKQLEKLGAQSIHVIEMAQGQKISRF 343

Query: 296 VAWSFLDDAARQAW 309
           +AWSF +   R+ W
Sbjct: 344 IAWSFQNAEQRKLW 357