Pairwise Alignments

Query, 317 a.a., Ribosomal RNA large subunit methyltransferase F from Pseudomonas putida KT2440

Subject, 264 a.a., RlmF-related methyltransferase from Methanococcus maripaludis S2

 Score = 45.8 bits (107), Expect = 1e-09
 Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 15/163 (9%)

Query: 40  GKPSIDFANPEAVRVFNRALLKAQYGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNA 99
           GKP IDF N EA++ +N A+L   +G+   D   D L P    R  Y+ +       D+ 
Sbjct: 31  GKPRIDFKNKEAMKEYNIAILGHVFGLD-MDFHEDALIPTPINR--YLFIKNIFDEKDDI 87

Query: 100 GDVPRGAQVRALDIGVGANCIYPLLGYSDYRWRFLGSDIDPVALASAKAIVQANGLGKAI 159
            DV        L+IG G+  I  L+    +      +D     L  AK  +  N L   I
Sbjct: 88  KDV--------LEIGTGSGIISILIA-KYFECNVTATDTVSDYLKIAKDNISKNNLTSKI 138

Query: 160 TLRQQANRAHILSGLLQ-EGERFDLTLCNPPFHASRDEATRGS 201
            L    ++  I+  + + + ++FDL +  PP++A    A++ S
Sbjct: 139 NLID--SKGKIIFDIPELKNKKFDLIISYPPYYADNSVASKRS 179