Pairwise Alignments

Query, 317 a.a., Ribosomal RNA large subunit methyltransferase F from Pseudomonas putida KT2440

Subject, 264 a.a., RlmF-related methyltransferase from Methanococcus maripaludis JJ

 Score = 45.8 bits (107), Expect = 1e-09
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 40  GKPSIDFANPEAVRVFNRALLKAQYGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNA 99
           GKP IDF N EA++ +N A+L   +G+ + D   D L P    R  Y+ +       D+ 
Sbjct: 31  GKPRIDFKNKEAMKEYNIAILDHVFGL-NMDFHEDALIPTPINR--YLFIKNIFDEKDDI 87

Query: 100 GDVPRGAQVRALDIGVGANCIYPLLGYSDYRWRFLGSDIDPVALASAKAIVQANGLGKAI 159
            DV        L+IG G+  I  L+    +      +D     L  A+  +  N L   I
Sbjct: 88  KDV--------LEIGTGSGIISILIA-KYFECNVTATDTVSDYLKIAEGNISKNNLTSKI 138

Query: 160 TLRQQANRAHILSGLLQ-EGERFDLTLCNPPFHASRDEATRGS 201
            L    ++  I+  + + + ++FDL +  PP++A    A++ S
Sbjct: 139 NLID--SKGKIIFDIPELKNKKFDLIISYPPYYADNSVASKRS 179