Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

 Score =  550 bits (1418), Expect = e-161
 Identities = 292/498 (58%), Positives = 373/498 (74%), Gaps = 12/498 (2%)

Query: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60
           MKPSL LK+GQQL MTPQLQQAIRLLQLSTLDLQQEIQEALESNP+LE +E+ ++  + D
Sbjct: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60

Query: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP 120
            +    E+    E ++    E   S+D +E  E    I  EL +DT W+++Y  +  S  
Sbjct: 61  SVRMTEESP--REPEELYEPEPQDSSDLIEKSE----ISAELEMDTTWDEVYSANTGSTG 114

Query: 121 -SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEE 179
            + DDD   +   T+  ++LQ +L WQL+L P SD DR IAV LID+I+  GYL  +LEE
Sbjct: 115 LALDDDAPIYQGETT--QTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEE 172

Query: 180 ICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRL 239
           I      + DIELDE+EAV  RIQQF+P GV + NL +CLLLQL   P  TPW+ EA+ L
Sbjct: 173 IQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLL 231

Query: 240 VTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVR 299
           ++ +ID LG+RDY  +++  K+KE++LR++++L+Q L+PRPGS+I     EYV+PDV V 
Sbjct: 232 LSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVY 291

Query: 300 KDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNET 359
           K+  RWLV +N +++P+L++N QYA  +R    +A++ ++R  LQEA+W IKSL+SRNET
Sbjct: 292 KEQGRWLVTINPDSVPKLKINQQYADLMR--GNNAESNYIRTNLQEAKWLIKSLESRNET 349

Query: 360 LMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYEL 419
           L+KVA  IVEHQ  F ++G+EAMKP+VL+D+A AV MHESTISRVTTQKYMHTPRGI+EL
Sbjct: 350 LLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFEL 409

Query: 420 KYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVA 479
           KYFFSSHVST  GGECSSTAIRA+IKKLVAAEN  KPLSDSKIA LL  QGIQVARRT+A
Sbjct: 410 KYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIA 469

Query: 480 KYRESLGIAPSSERKRLM 497
           KYRESLGIAPSS+RKRL+
Sbjct: 470 KYRESLGIAPSSQRKRLL 487