Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  296 bits (759), Expect = 9e-85
 Identities = 193/510 (37%), Positives = 284/510 (55%), Gaps = 24/510 (4%)

Query: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDF--DN 58
           +  SL L+  Q L MTPQL Q+I+LLQ++ L+L   I + +E NP+LE Q   E    D 
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 59  SD----PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQT 114
            D    P     E   AA   D      + S + L +G  ++   N  P DTA +     
Sbjct: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDAD-FANVFPDDTAPQRADAP 121

Query: 115 SA----SSLPSNDDDE-WDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSING 169
                  S+P   D E +D        ++L+  L  QL  A  + +DRLIA   ID ++ 
Sbjct: 122 ELLGQWKSMPGAGDAEGYDLDDFVGGRKTLRETLAEQLPFALSAVSDRLIARYFIDQLDD 181

Query: 170 QGYLEDTLEEICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPAT 229
            GYL   L E        L    ++V  VLH +QQF+P GV AR LGECL +QLR     
Sbjct: 182 AGYLHADLAETAE----TLGAAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARNRL 237

Query: 230 TPWMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEP 289
            P M   + LV + ++LL  RD++ L +   + E++L  ++  ++ L+P+PG+  E+   
Sbjct: 238 DPAM---EALVAN-LELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVF 293

Query: 290 EYVVPDVIVRKDSDR-WLVELNQEAIPRLRVNPQYAGFVRRAD--TSADNTFMRNQLQEA 346
           E ++PDV+VR   D  WLVELN +A+PR+ VN  Y   + R+    S +  F+   LQ A
Sbjct: 294 EAIIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNA 353

Query: 347 RWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTT 406
            W  +SL  R  T+MKVA++IV  Q  FL HG   ++PL L  +A+A+ MHEST+SRVT+
Sbjct: 354 NWLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTS 413

Query: 407 QKYMHTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLSDSKIAGL 465
            KYM TPRG++ELKYFF+  + ++E G+  S+ ++R  I+ ++  E+    LSD  I  +
Sbjct: 414 NKYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDV 473

Query: 466 LEAQGIQVARRTVAKYRESLGIAPSSERKR 495
           L+  G+ +ARRTVAKYRE++ I  S +R+R
Sbjct: 474 LKQAGVDIARRTVAKYREAMSIPSSVQRRR 503