Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 489 a.a., RNA polymerase factor sigma-54 from Parabacteroides merdae CL09T00C40

 Score =  268 bits (684), Expect = 4e-76
 Identities = 180/513 (35%), Positives = 282/513 (54%), Gaps = 42/513 (8%)

Query: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLER-QEDGEDFDNS 59
           +K  L  K+ Q+L+  PQ  Q IRLL+L  ++L++ I+  LE NP LE  +E  +DFD +
Sbjct: 2   LKQQLQQKLQQKLS--PQQIQLIRLLELPAIELEERIKHELEDNPALEEGKEIADDFDRT 59

Query: 60  DPMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSL 119
           D   +  E   A E++  S  ++ +S   L D    + IP+           Y+    + 
Sbjct: 60  D---EGGEELAANEMEGESETDTDLS---LGDYMSEDDIPD-----------YKLRELNE 102

Query: 120 PSNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEE 179
            +   ++  F    S  ESL  +LL QL L  + +    IA  +I +I+  GYL   L  
Sbjct: 103 RAEKKEDVPF----SVSESLNEYLLQQLGLRDLPEKQVKIAEYIIGNIDDDGYLRRDLSA 158

Query: 180 ICAG--FDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAK 237
           I     F    D+   E+E VL  IQ F+PAGVGARNL ECLLLQL +   T+     A 
Sbjct: 159 IADDLVFQAGQDVTEKEIETVLAIIQDFDPAGVGARNLQECLLLQLARREKTSETRL-AT 217

Query: 238 RLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRP----GSQIESSEPEYVV 293
            ++TDF +    + Y ++++ + I E  L++ I  + +L+P+P    G  +E++  + ++
Sbjct: 218 LMLTDFFEEFTRKHYDKIIKGLDIDETALKRAIREITTLDPKPCASWGGSMETALSQ-II 276

Query: 294 PDVIVRKDSDRWLVELNQEAIPRLRVNPQYAG-FVRRADTSADNT--------FMRNQLQ 344
           PD +V   +   ++ +N   IP +R+N +YA  F   A   A+ T        F++ +L 
Sbjct: 277 PDFVVEAVNGELILSMNNRGIPDMRINREYAEMFQDYAGNKANQTTQMKEAVQFVKQKLD 336

Query: 345 EARWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEA-MKPLVLHDIAEAVGMHESTISR 403
            A+WFI +++ R ETL +    I+  QR F   GDEA ++P++L D+AE  G   STISR
Sbjct: 337 SAQWFIDAIKQRQETLQRTMETIILLQRDFFLTGDEATLRPMILKDVAERAGYDISTISR 396

Query: 404 VTTQKYMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIA 463
           V+  KY+ T  GIY LKYFFS  + T  G E S+  ++ I+K+ +  E+++KPL+D ++A
Sbjct: 397 VSNSKYVQTNFGIYPLKYFFSESMQTDSGEEISTREVKKIMKEHIDGEDKRKPLTDEELA 456

Query: 464 GLLEAQGIQVARRTVAKYRESLGIAPSSERKRL 496
            +L+ +G  +ARRTVAKYRE LGI  +  RK +
Sbjct: 457 SILKEKGYIIARRTVAKYREQLGIPVARLRKEI 489