Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 492 a.a., RNA polymerase sigma-54 factor from Dechlorosoma suillum PS

 Score =  426 bits (1094), Expect = e-123
 Identities = 232/503 (46%), Positives = 333/503 (66%), Gaps = 18/503 (3%)

Query: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60
           MKP+L LK+ Q L +TPQLQQ+IRLLQLSTL+L+QE+++ L  NP+LER+++     N +
Sbjct: 1   MKPTLQLKLSQHLALTPQLQQSIRLLQLSTLELEQELEKYLLENPLLEREDE-----NYE 55

Query: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERI-PNELPVDTA-----WEDIYQT 114
           P    +E + A    + +  E     D+ E GE ++   P E+  D+       ED +  
Sbjct: 56  PSYSGSEGEYAGSTAEAA-AEGPREGDSGESGEGADSHGPEEVRDDSRDSLGEGEDWFAE 114

Query: 115 SASSLPSNDDDE-WDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYL 173
            +    S D+DE  DF    +A  SL+ HL WQL L  +S+ DR +   LI++++  GYL
Sbjct: 115 GSYPSASRDEDEDSDFQEVQAANTSLRDHLNWQLGLMQLSERDRQLVSFLIEALDEDGYL 174

Query: 174 EDTLEEICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWM 233
              LEE+      EL+I+LD+++  L  +Q  +P GVGAR  GECL LQL  LPA     
Sbjct: 175 TQPLEELQEALPEELEIDLDDLQIALRHLQHLDPTGVGARTPGECLALQLEALPADEV-R 233

Query: 234 TEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVV 293
            +A +LV   ++LL  RD+++L + +   ++ LR V  LV+SLNPRPG+Q    +  Y+ 
Sbjct: 234 DQALKLVRHHLELLAGRDFTKLKKLLGCDDERLRAVTNLVKSLNPRPGAQYAPLDARYIT 293

Query: 294 PDVIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSL 353
           PDV+V+K  ++W   +N +A PRLR+N  YA  + +   S+    +  QLQEARW IK++
Sbjct: 294 PDVVVKKVRNQWTASINPDAYPRLRINRLYAEILSKQRGSS----LSGQLQEARWLIKNV 349

Query: 354 QSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTP 413
           Q R +T+++V+  I++ QR F +HG+ AM+PLVL +IAE +G+HEST+SRVTTQKYM TP
Sbjct: 350 QQRFDTILRVSQAILDRQRQFFEHGEVAMRPLVLREIAETLGLHESTVSRVTTQKYMATP 409

Query: 414 RGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQV 473
           RGI+ELKYFF SHV+T  GG CS+TAIRA+IK+LVAAE+ +KPLSDS+I+ +L  QGI V
Sbjct: 410 RGIFELKYFFGSHVATDTGGACSATAIRALIKQLVAAEDPRKPLSDSQISEILGQQGIVV 469

Query: 474 ARRTVAKYRESLGIAPSSERKRL 496
           ARRT+AKYRE+L I+P++ RK +
Sbjct: 470 ARRTIAKYREALNISPANLRKSI 492