Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 491 a.a., RNA polymerase sigma-54 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  543 bits (1398), Expect = e-159
 Identities = 288/500 (57%), Positives = 370/500 (74%), Gaps = 13/500 (2%)

Query: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDF--DN 58
           MK SL LK+GQQLTMTPQLQQAIRLLQLS+L+LQQEIQ+AL+SNP+LE +E+  D   + 
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPSER 60

Query: 59  SDPMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASS 118
              +AD   ++ +A+ Q+     STV   ++ +    E +P ELP+DT W++++  S +S
Sbjct: 61  KQDLADTDFSETSAQPQEQD--NSTV---DIAESLTKESLPEELPMDTTWDEVFTASPNS 115

Query: 119 -LPSNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTL 177
              ++ +D+  F   TS G  L  HL WQ NL P S+TD  IA  +ID+I+ QGYL  + 
Sbjct: 116 GSGASREDDMPFQGETSEG--LYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQST 173

Query: 178 EEICAGF-DPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEA 236
           E+I     +PE  IELDEVEAVL RIQ F+P GV AR+L ECLL+QL      TP +  A
Sbjct: 174 EDILEAMGNPE--IELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFSPDTPHLENA 231

Query: 237 KRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDV 296
           + L+ D +DL+ +RD+  LMR+ K+KEDELR  I L+Q+LNPRPG  I + + EYVVPDV
Sbjct: 232 RMLIKDHLDLIAARDFRLLMRKTKLKEDELRDSIALIQTLNPRPGLLITAVDEEYVVPDV 291

Query: 297 IVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSR 356
            V K + RW+VELN + +P++ VN QYA   R +   AD+ F+R  LQEA+WFIKSL+SR
Sbjct: 292 SVSKKNGRWVVELNPDCMPKINVNQQYAAMARSSKNQADSQFIRGHLQEAKWFIKSLESR 351

Query: 357 NETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGI 416
           NETL+KVA  IV++Q+GF ++G+EAMKP+VL+DIAEAV MHESTISRVTTQKYMHTP+G+
Sbjct: 352 NETLLKVANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGL 411

Query: 417 YELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARR 476
           +ELKYFFSSHV T +GGECSSTAIRA IKKLVAAENQKKPLSDSK+A LL  QGI VARR
Sbjct: 412 FELKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARR 471

Query: 477 TVAKYRESLGIAPSSERKRL 496
           T+AKYRE++ I PS++RK L
Sbjct: 472 TIAKYREAMLIPPSNQRKSL 491