Pairwise Alignments

Query, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

Subject, 476 a.a., RNA polymerase sigma-54 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  330 bits (846), Expect = 7e-95
 Identities = 189/498 (37%), Positives = 284/498 (57%), Gaps = 39/498 (7%)

Query: 7   LKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSDPMADNA 66
           LK+ QQL MTPQLQQAIRLLQLS L+L + +Q+ L  NP LE                  
Sbjct: 9   LKLSQQLVMTPQLQQAIRLLQLSRLELVETVQQELLENPFLE------------------ 50

Query: 67  ENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLPSNDDDE 126
                 E  D     S   A + +D    E    EL  +  WED     ASS       E
Sbjct: 51  ------EGMDEGAASSASEASSRKDESAPEAYDRELSRNADWEDYLGEFASSSRQAQVRE 104

Query: 127 WD-------FTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEE 179
            +       F  R SA  SL+ HL+WQL L+ +++  + I  T+I +I   GYL+ ++E+
Sbjct: 105 TELPEEMTAFEARYSARPSLEGHLMWQLRLSRLTEDQKGIGETIIGNIGSSGYLQASVED 164

Query: 180 ICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRL 239
           I          +  EV  VLH +Q+F+P GV +R   ECLL+Q+  L      +     L
Sbjct: 165 IAE----MCGADASEVIPVLHAVQRFDPVGVASRTPQECLLIQIEMLGYDRDRVLV--EL 218

Query: 240 VTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVR 299
           V D ++ L +R Y  L+R+ K+  D+L++ ++++QSL+P PGS    S+P +V PDV V 
Sbjct: 219 VRDHLEDLETRRYKPLLRKFKLDMDDLKEYLDIIQSLDPMPGSSFGGSDPMFVSPDVFVY 278

Query: 300 KDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNET 359
           K  D +++ LN + +P L+++  Y   +    T  D  F++ +++ A W IKSL  R  T
Sbjct: 279 KYDDEFVIVLNDDGLPHLQLSSLYDQSLAGV-TGKDKDFVQEKVRSASWLIKSLYQRQRT 337

Query: 360 LMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYEL 419
           L KV   I+++QRGF + G   ++PL+L DIA+ + MHEST+SR+TT K++ TP G++EL
Sbjct: 338 LYKVVESIIKYQRGFFEDGVTRLRPLILKDIADDISMHESTVSRITTNKFVATPHGVFEL 397

Query: 420 KYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQ-GIQVARRTV 478
           K+FF+S +   +G +  S +++A+IKKL+  EN K+PLSD +I  +L+ Q  + +ARRTV
Sbjct: 398 KFFFNSALELDDGSQVGSESVKALIKKLIGEENPKEPLSDERIGEILKEQLQVNIARRTV 457

Query: 479 AKYRESLGIAPSSERKRL 496
           AKYR ++ I  SS+RK +
Sbjct: 458 AKYRTAMNIPSSSKRKEV 475