Pairwise Alignments

Query, 693 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  316 bits (810), Expect = 4e-90
 Identities = 171/445 (38%), Positives = 268/445 (60%), Gaps = 4/445 (0%)

Query: 249  RHEAENSLQRMAQYDFLTGLPNRQQLQQQLDKILVDGGRLQHRVAVLCVGLDDFKGINEQ 308
            R + E  L+++   D LTGLPNR  LQ  L  ++     + H + VL   LD+FK IN+ 
Sbjct: 979  RKQQEEELRKLTNNDLLTGLPNRSNLQVTLGNLV--NKEINHALMVL--DLDNFKRINDS 1034

Query: 309  FSYQVGDQLLLALADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLE 368
              +QVGD+LL  ++ R+++   +   + RLGGD+FA+V         +A +A  I+D   
Sbjct: 1035 LGHQVGDKLLKLVSVRIKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFN 1094

Query: 369  VPFDLDHEQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSE 428
              +++D+EQ+ L  ++GI L+P+D  + + LL+KA+  M  AK+   N YQFY  S++  
Sbjct: 1095 TVYEIDNEQLVLGVSVGIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEH 1154

Query: 429  MRRRRELEKDLREALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPL 488
              ++ E E  +RE L  +   + YQP++  +   V G+EAL+R  HP LG++PP+ FIPL
Sbjct: 1155 AIKQLETENLIREGLKEDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPL 1214

Query: 489  AEQNGSIISIGEWVLDQACRQLREWHDQGFSDLRMAVNLSTVQLHHSELPRVVNNLLQAY 548
            AE+NG I+ IGE VL +AC   ++W +QG    R+AVNLS+ Q    +L + + ++L+  
Sbjct: 1215 AEENGLIVEIGEIVLRKACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLT 1274

Query: 549  RLPPRSLELEVTETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKI 608
            +LP   LELE+TE  +++    A   +  L + G  +A+DDFGTGYSSLSYLK  P+  +
Sbjct: 1275 QLPASHLELEITEGTVIKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTL 1334

Query: 609  KIDKSFVQDLLDDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYH 668
            KIDK+FV D+   D D  +V +II +  ++G+ V+ EGVE A Q   + A  C E QGY 
Sbjct: 1335 KIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYI 1394

Query: 669  YSKPLSARELTHFLKQAQRNRVSVS 693
            +SK ++  E T  L++ Q   ++++
Sbjct: 1395 FSKAINEAEFTLLLQEDQAKSIAIN 1419