Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 433 a.a., Probable RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  112 bits (280), Expect = 2e-29
 Identities = 101/356 (28%), Positives = 162/356 (45%), Gaps = 38/356 (10%)

Query: 62  PITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQL 121
           PI V  A A    +     A+G++ AL  +++   V G +  + F+ GQ VKAG LL ++
Sbjct: 65  PIPVRVAPAVTGDFPLYFKALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEI 124

Query: 122 ND-DQETALL---GTAL---ADLGLAKVDFGRGSQLVGDSAISRGEFDR---LSSQY--- 168
           +    + ALL   GT L   A L  A+VDF R   L  + +I++   D    L  QY   
Sbjct: 125 DPRPYQNALLQAEGTLLQNQAQLKNAQVDFERYRGLYAEDSIAKQTLDTAAALVGQYQGT 184

Query: 169 -RRNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAG--TVIATLQDTSSLYVDF 225
            + NQA V   K      +I AP SG +G+RQ+DIG  +AA   T +A +  T  + V F
Sbjct: 185 VKTNQAAVNDAKLNLEFTKIRAPISGRVGLRQLDIGNLVAANDTTALAVITQTQPISVVF 244

Query: 226 NVPEQALPHLSLGQQVLVQVAAYPGQR------FPGSLSAINPKVEETTRNLLVRATMAN 279
            +PE  L  +    +   ++      R        G L +++ +++ TT  L  +A   N
Sbjct: 245 TLPENNLDTVLARYRSGAKLPVEAWDRGDVKLQASGVLQSLDNQIDVTTGTLKFKARYEN 304

Query: 280 PDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQ 339
            D  L P  F ++ +L    +   + P +AI +   G  VY                +G 
Sbjct: 305 RDQSLFPNQFVNVRLLADTLKGVTLAPTAAIQFGTNGTFVYAL--------------EGD 350

Query: 340 PQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRIGQDNALKP 395
            ++  ++  +K G       VV+EGL AG++VV  G  +L  G+ + +  D+   P
Sbjct: 351 KKVTIKK--LKIGASDGANTVVTEGLAAGDRVVLEGTDRLKEGSEVEVVSDSQEVP 404