Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 413 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  117 bits (293), Expect = 6e-31
 Identities = 100/349 (28%), Positives = 161/349 (46%), Gaps = 40/349 (11%)

Query: 62  PITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQL 121
           P+ V  A  EQ  ++    A+GS+  L  V+L   V G +  L F+ GQ+VK G LL  +
Sbjct: 55  PVPVRVAKVEQGEFEVFNKALGSVTPLNTVNLRSRVGGELVELRFEEGQRVKKGDLLAVI 114

Query: 122 ND-------DQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFD---RLSSQYR-- 169
           +         Q    L    A L  A+VDF R   L  D +I++   D    L SQY+  
Sbjct: 115 DPRPYKVALQQAEGTLQQNRAQLKNAQVDFERYRGLFADDSIAKQTLDTQEALVSQYQGT 174

Query: 170 --RNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAG--TVIATLQDTSSLYVDF 225
              NQA V + +      +I +P  G +G+RQ+D+G  +AA   T +  +  T  + + F
Sbjct: 175 LAANQASVNEARLNLEFTQIRSPIDGRVGLRQLDVGNLVAANDTTPLVVITQTQPMSISF 234

Query: 226 NVPE-QALPHLS---LGQQVLVQVAAYPGQRF---PGSLSAINPKVEETTRNLLVRATMA 278
            +PE   LP L+    G ++ VQ+    G++     G L +I+ +++ TT  L ++A   
Sbjct: 235 TLPEGDLLPVLTRYRQGDKLAVQIWD-RGEKLMFGEGLLESIDNQIDATTGTLRLKARFD 293

Query: 279 NPDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKG 338
           N    L+P  F ++ + +      V++P +A+ +   G   YV      +D K       
Sbjct: 294 NEQELLIPNQFVNVRLRVETLSDAVLIPSAALQFGSRGTFAYVVG----EDNK------- 342

Query: 339 QPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIRI 387
                 + R +K G       VV EGL+ GE+VV  G  +L  GA + +
Sbjct: 343 -----VQLRLLKAGPSNGETTVVLEGLEVGERVVMEGTDRLRDGAEVEV 386