Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 343 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  104 bits (259), Expect = 4e-27
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 27/298 (9%)

Query: 93  LSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDDQETALLGTALADLGLAKVDFGRGSQLVG 152
           L+  V G ++++   +GQ+VK G++L +LN D+   L   A A+  LA V F R  +L  
Sbjct: 61  LAFRVPGQLQTIDVLAGQEVKKGEVLARLNPDEYALLEQQASANFQLADVQFQRAQRLRQ 120

Query: 153 DSAISRGEFDRLSSQYRRNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYLAAGTVI 212
           D  +S  +FD+  + +   +A  EQ KA     ++ AP+ GTI +   +  +Y+AA   +
Sbjct: 121 DKVVSEQDFDQAQANHNSAKATWEQAKANLRYTQLIAPYDGTISLIPAEQYEYVAAKQGV 180

Query: 213 ATLQDTSSLYVDFNVPEQALPHLSL-GQQVLVQVAAYPGQRFPGSLSAINPKVEETTRNL 271
             +Q    L V F +P+  L   S  G +  +   ++P +++P     I+ + +  TR+ 
Sbjct: 181 MNIQTNQLLKVQFLLPDHLLNRFSRDGVEAHMVFDSFPNRQYPLQFQEIDTEADSKTRSY 240

Query: 272 LVRATMANP-DGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDG 330
            V   M  P D  +LPGM   + ++ P+     V+P SA+                ++ G
Sbjct: 241 KVTMVMERPNDVGILPGMAGRVSLMAPSGS-ATVIPTSALF--------------AEQGG 285

Query: 331 KPVY--DDKGQPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLTPGAAIR 386
           K V+  DD G    +  +  V   E+R     V  GL  G++++ +G   +T G  +R
Sbjct: 286 KYVWRVDDAG----LVSKAAVTLNEQRQ----VLTGLNDGDRIIISGVSGVTEGIKVR 335