Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  158 bits (400), Expect = 2e-43
 Identities = 105/325 (32%), Positives = 165/325 (50%), Gaps = 17/325 (5%)

Query: 61  PPITVAAAMAEQRPWQERLPAVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQ 120
           P I+V     + +   + L  VG LKA Q VD++ EV G V  +   + QQVK GQ+L++
Sbjct: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89

Query: 121 LNDDQETALLGTALADLGLAKVDFGRGSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLKA 180
           L+DD+  A L  A A L   +       +L+  +AI+  E D   ++    QA +   +A
Sbjct: 90  LDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQA 149

Query: 181 QKIKKRINAPFSGTIGIRQVDIGQYLAAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQQ 240
                 I APF GT+G      G++++AG+ + TL + S + +D  +PE+ LP LS G +
Sbjct: 150 NLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMK 209

Query: 241 VLVQVAAYPGQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNPQ 300
           V     A+P  +F GS+ A++ ++ + T NL VR    NPD +L PGM  S  I  P   
Sbjct: 210 VQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAIS 269

Query: 301 PQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVVV 360
              ++P  A+ Y+     VYV           + +D      VA++R V  G R +  VV
Sbjct: 270 AP-IIPVQALEYSGTKRFVYV-----------IGEDN-----VAKRREVSLGARVENQVV 312

Query: 361 VSEGLQAGEQVVTAGQLKLTPGAAI 385
           + +GLQ GE++V  G + +   A +
Sbjct: 313 IEKGLQIGEKIVVQGIVNMRDNARV 337