Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 378 a.a., multidrug resistance protein AcrA/AcrE family (RefSeq) from Shewanella amazonensis SB2B

 Score =  116 bits (291), Expect = 1e-30
 Identities = 105/390 (26%), Positives = 166/390 (42%), Gaps = 47/390 (12%)

Query: 23  LRRRMLIMLAVVLLIVLALGGYKAFSIYQQIQMFTAPKPPITVAAAMAEQRPWQERLPAV 82
           +R+ + I  A+ +++ ++     A     Q QM     PP+ V        P    +   
Sbjct: 1   MRQMLKIASAIGMVLWVSACQEDAQQAANQQQM-----PPMEVGTVQVTAAPQNIMVELP 55

Query: 83  GSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDDQETALLGTALADLGLAKV 142
           G  +A    ++  +V GI+   +F  G++VK GQ L +++D    A L +A ADL  A+ 
Sbjct: 56  GRSRAFLEAEVRPQVSGIIMERNFVEGREVKEGQSLYKIDDATYKATLESAKADLASAQA 115

Query: 143 DFG-------RGSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLKAQKIKKRIN------- 188
                     R  +LV  +AIS+ +FD   + Y+   A V+  +AQ     IN       
Sbjct: 116 SLASAKARAARYEKLVKTNAISKQDFDEADAAYKEALARVKVAEAQLHTANINLNYTEVQ 175

Query: 189 APFSGTIGIRQVDIGQYLAA--GTVIATLQDTSSLYVDFNVPEQAL---------PHLSL 237
           AP SG IG   V  G  + A  G V+AT+Q    + VD       L           L  
Sbjct: 176 APISGRIGKSSVTPGALVTANQGQVLATIQQLDPINVDITQSSAQLLALKAKLRAGKLQA 235

Query: 238 GQQVLVQVAAYPGQRFP--GSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLIL 295
                VQ+    G  +   G L      V+E T ++++RA   NPD  LLPGM+   ++ 
Sbjct: 236 ADNAEVQLVLEDGTTYEHKGKLQFAEVSVDENTGSVILRAEFPNPDNVLLPGMYVRAMLN 295

Query: 296 LPNPQPQVVVPESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERR 355
                  ++VP+ AIT    G +V +    + K                E RTV T E  
Sbjct: 296 TGVDPNAILVPQKAITRNTRGEAVAMVVNAESK---------------VEARTVTTAEVI 340

Query: 356 DGVVVVSEGLQAGEQVVTAGQLKLTPGAAI 385
           +    ++ GL AG++++  G  K+ PGA +
Sbjct: 341 NHQWRITSGLNAGDKLIVEGLQKIRPGAPV 370