Pairwise Alignments

Query, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

Subject, 354 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  134 bits (337), Expect = 4e-36
 Identities = 102/367 (27%), Positives = 169/367 (46%), Gaps = 24/367 (6%)

Query: 27  MLIMLAVVLLIVLALGGYKAFSIYQQIQMFTAPKPP------ITVAAAMAEQRPWQERLP 80
           M I+   VL  VL LGG  A      +      K        + V  A   +    +R+ 
Sbjct: 1   MRILRQAVLATVLVLGGGAALVGRSWLMPDADGKQSAPALRALPVEVAAVRRARVADRVE 60

Query: 81  AVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDDQETALLGTALADLGLA 140
           AVG+ +A Q + +     G +  + F  G++V  G +L++L+D  + A +  A A L   
Sbjct: 61  AVGTTRAHQAIAVVPLASGRIVEMPFPPGRKVNKGDVLVRLDDAAQRADVEEAEATLTQV 120

Query: 141 KVDFGRGSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLKAQKIKKRINAPFSGTIGIRQV 200
                R   L    A+++   D L S      A +++       + I APF+G +G R++
Sbjct: 121 SRALERARSLRRTQAVAQATVDDLQSNRAAAAARLDRAHKDLADRVIAAPFAGIVGFREL 180

Query: 201 DIGQYLAAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQQVLVQVAAYPGQRFPGSLSAI 260
           D+G  ++ G  + TL D SS+ V+F VPE     L  G  +     A+PG+ F G++  I
Sbjct: 181 DVGARVSEGERLTTLDDLSSVDVEFAVPEIHFGRLRPGMAIEATSQAFPGRIFTGAIDRI 240

Query: 261 NPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVY 320
           + ++ E +R   VRAT+ NP G L  G+F ++ I++   +P ++VPE AI     G+ VY
Sbjct: 241 DSRIGEVSRAFRVRATLPNPQGLLPSGLFLNVSIVI-EERPALMVPEEAIQAEAGGSVVY 299

Query: 321 VASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAGQLKLT 380
           V                        ++ +  G+R    V V +GL  G+QVV+ G  +L 
Sbjct: 300 VIQGG-----------------AVRRQPIVLGQRTGTAVEVRDGLAEGDQVVSRGIQRLR 342

Query: 381 PGAAIRI 387
            G+ + +
Sbjct: 343 DGSPVTV 349