Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1045 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Pseudomonas stutzeri RCH2

 Score =  511 bits (1317), Expect = e-149
 Identities = 333/1035 (32%), Positives = 551/1035 (53%), Gaps = 32/1035 (3%)

Query: 7    FIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYITQP 66
            FI RP+ A V++L+I+L G  +  KL + QYP +    + ++ +YPGA+A+T+Q  + Q 
Sbjct: 5    FIDRPIFAWVIALVIMLAGGLSILKLPVNQYPSIAAPAVGISVSYPGASAQTVQDTVVQV 64

Query: 67   LQQSLASAEGIDYMTSVSRQNFSI-ISIYARIGADSDRLFTELLAKANEVRNKLPQDSED 125
            ++Q L   +G+ Y++S S  + S+ I++    G + D    ++  K       LPQ+ + 
Sbjct: 65   IEQQLNGIDGLRYISSESNSDGSMTITVTFDQGTNPDIAQVQVQNKLQLATPLLPQEVQQ 124

Query: 126  PVLSKEAADASALMYVSFYSKEMSNPQ--ITDYLSRVIQPKLATLPGMAEAEILGNQVFA 183
              +    A  + L+ +   S + S  Q  + +Y+   +Q  ++   G+ + ++ G Q +A
Sbjct: 125  QGIRVTKAVRNFLIVIGLVSTDGSLDQRDLANYIVANMQDPISRTKGVGDFQVFGAQ-YA 183

Query: 184  MRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEV------KGEYVVTSVNASTELKSA 237
            MR+WLDP KL  F ++  DV+ A++  N   ++G++       G+ +  +V   T L++ 
Sbjct: 184  MRIWLDPAKLNSFSMTPVDVSTAIQAQNVQISSGQLGGLPALPGQQLNATVIGKTRLQTP 243

Query: 238  EAFAALPLKTSGD-SRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVI 296
            E F  + LK + D S+V LGDVARVE+G E Y   + F+G P+  + +K    AN LD +
Sbjct: 244  EQFRNILLKVNSDGSQVRLGDVARVELGGETYAVSAHFNGKPAAGLALKLATGANALDTV 303

Query: 297  KEVRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALR 356
            + VR+ + EL+   P  + V   YD T  I ASI  V+ TL EA ++V +V++LFL   R
Sbjct: 304  EGVRKTIEELKPFFPPGVEVVYPYDTTPVISASITGVMHTLLEAFVLVFLVMYLFLQNFR 363

Query: 357  SVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHM-EE 415
            + L+P + +P+ ++G    + + G+S+N LT+ AM+LAIGL+VDDAIVVVEN+ R M EE
Sbjct: 364  ATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENVERVMREE 423

Query: 416  GKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGI 475
            G SP +A  +   +I   ++ + + L+AV  P+ F  G TG ++++F++T+  A+++S +
Sbjct: 424  GLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMVLSVL 483

Query: 476  VALTLSPMMCALLLR-----REQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVF 530
            +AL  +P +CA LL+           G     ++ FER    Y+R + A L  +   L+ 
Sbjct: 484  MALIFTPALCATLLKPIDKDDHHEKRGFFGWFNRTFERSVNGYERGVKAVLKRKAPFLLL 543

Query: 531  AVIILCLIPVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTP--LFKAFP 588
             V+I+ ++ VL     +   P EDQGV+F    +P  +  +      D      L +   
Sbjct: 544  YVLIVGVMVVLFTRIPSAFLPEEDQGVLFAQVMTPSGSTAERTQQSIDAMRSYLLEEEGD 603

Query: 589  EYYSSFQINGFN----GVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGL---QIF 641
               S F + GF+    G  +GI    LKPW+ER   +  +  L Q   +  +     Q+F
Sbjct: 604  IVRSVFTVTGFSFAGRGQSSGIAFIGLKPWSERTNKEDSVFALAQRAQQHFASFRDAQVF 663

Query: 642  GFNLPSLPGTGEGLPFQFVI-NTAGDYPALLDVAQ-RIKTRAQESGKFAFLDIDLAFDKP 699
             F  P++   G    F F + + AG    +L  A+ +    A +S     +  +   D+P
Sbjct: 664  AFAPPAVMELGNATGFNFFLQDRAGVGQQVLQQARDKFMQLASQSPVLTRVRPNTLRDEP 723

Query: 700  EVVVDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGW 759
            +  V ID  KA  +G+S+  +  TL+   G   +N F   GR  KV  Q     R NP  
Sbjct: 724  QYQVLIDDEKARVLGISLAEINSTLSIAWGGRYVNDFIDRGRVKKVYLQGVADARMNPED 783

Query: 760  LNNYYVKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQG--VPMVSLGEALKTVQ 817
            L  +YV+ND G+++P S   +        +L+++  ++A  + G   P  S G+A+  V+
Sbjct: 784  LAKWYVRNDAGEMVPFSAFASGEWTYGSPKLSRYNGVSAIEMLGEPAPGYSSGDAMAEVE 843

Query: 818  DIAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVT 877
             I   + P G  + + G + +    GS     + L+L ++FL LAA +ES+  P  +++ 
Sbjct: 844  RIV-AQLPPGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIPFSVMLV 902

Query: 878  VPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAI 937
            VPL I GAL    L   S  ++ QVGLVT IGL +++ ILIVEFA  L  E+G+S  +A 
Sbjct: 903  VPLGIVGALAFTMLRGLSNEVFFQVGLVTTIGLSARNAILIVEFAKALH-EQGMSYADAA 961

Query: 938  EEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPC 997
             +A  +RLRP++MT+ A + G+VPL +ASGAGA S+  IG  +  GM    +  +F +P 
Sbjct: 962  LQACRMRLRPIIMTSLAFILGVVPLAVASGAGAGSKHAIGTGVIGGMLTAAVLAIFWIPL 1021

Query: 998  IYTLLAHKASAKAPA 1012
             Y ++        PA
Sbjct: 1022 FYVMICTFFDRTKPA 1036