Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1056 a.a., Hydrophobe/amphiphile efflux-1 HAE1 from Synechococcus elongatus PCC 7942

 Score =  562 bits (1449), Expect = e-164
 Identities = 352/1031 (34%), Positives = 549/1031 (53%), Gaps = 30/1031 (2%)

Query: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60
            ++  + FI+RPVL +V S+LI L G      L I Q P +    I V+  Y GA+AET++
Sbjct: 3    LSIANIFIKRPVLTTVCSILITLGGLVCLPILPIEQLPDIAPPQIQVSATYVGADAETVE 62

Query: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120
              +T  L+  +   EG++Y+TS S    S I +Y       D    ++    +    +LP
Sbjct: 63   NTVTSILENQINGVEGMEYITSTSAIGQSSIQVYFDPTRSPDLAQVDVNNLVSVAIPQLP 122

Query: 121  QDSEDPVLSKEAADASALMYVSFYSK--EMSNPQITDYLSRVIQPKLATLPGMAEAEILG 178
            Q  +   ++   +  S L + +F S   E     I++YLS  +QP LA + G+ +A + G
Sbjct: 123  QAVQQQGIAVTQSSPSILQFYTFSSPTGEFDAQFISNYLSLYVQPALARVKGVGQANLFG 182

Query: 179  NQVFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYV--------VTSVNA 230
            N  ++MRLWLDP +LA +GL+A DV +A++  N +   G+V G  V        +  +  
Sbjct: 183  NLEYSMRLWLDPNRLASYGLTAEDVASALQSQNQIIPVGQVGGPPVNSDQAYTFILRLQG 242

Query: 231  STELKSAEAFAALPLKTSGDSRVL-LGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPA 289
              +L + E F  + LKT  D  ++ + DV R E GA++Y    + DG P V +GI   P 
Sbjct: 243  QGQLSTVEQFNNVVLKTGEDGTLVRVKDVGRAEEGAQSYSVTLAADGRPGVGLGIYQLPG 302

Query: 290  ANPLDVIKEVRRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVF 349
            +N +DV   +R  +  LE Q P  L   + +D T F+ AS+ EV+ TL +A+ +VI+V+F
Sbjct: 303  SNAIDVANGIREQLAILEQQFPPGLEGKLVFDVTDFVNASLSEVLITLVQAIALVILVIF 362

Query: 350  LFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENI 409
            +FL   R+ LIP + IP+S++G L F+Q  G+S+NLLTL  +VLA GLVVDDAIVVVE I
Sbjct: 363  IFLQDWRTTLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLVLATGLVVDDAIVVVEAI 422

Query: 410  HRHMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGA 469
               +EEGK+P  A++E    +   V++ ++ L AV+ P+ F  G TG ++++FALTL   
Sbjct: 423  TEKIEEGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFPGATGRIYQQFALTLTFT 482

Query: 470  VIISGIVALTLSPMMCALLLRREQNPSGLAHRLDQL----FERLKGRYQRLLHATLDSRP 525
            ++IS   ALT SP M ALLLR  +   G   +   L    F+R++  Y + L      + 
Sbjct: 483  ILISTFNALTFSPAMSALLLRPAKQQQGWLGKFFNLFNAGFDRVRIGYSKALAIIDRLKF 542

Query: 526  VVLVFAVIILCLIPVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFK 585
            +V+      L L   L   T     P EDQG    +   P+ A L+Y      +   + +
Sbjct: 543  LVIGLFAAGLALTGWLFTTTPTGFVPTEDQGYFLGLIIGPEGAPLNYTQKVGQKIQSILE 602

Query: 586  AFPEYYSSFQINGFN----GVQTGIGGFLLKPWNERERTQMELLPLV----QAKLEEISG 637
              P   S+  I+GF+    G   GI    LKPW+ER+        +V    Q   E IS 
Sbjct: 603  TEPSVTSTAVISGFSFIGQGNNLGIYFASLKPWDERKAADQSAEAIVGRINQKLFEGISE 662

Query: 638  LQIFGFNLPSLPGTGE--GLPFQFVINTAG--DYPALLDVAQRIKTRAQESGKFAFLDID 693
             Q+     P++PG     G+ F     T G       L+   +I   A+E+         
Sbjct: 663  AQVRTVLPPAIPGFAAYGGVQFLITDQTGGALSVSQFLESVNKIIGLARENPITRQTFTP 722

Query: 694  LAFDKPEVVVDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPY 753
               + P++ +D+DR + A + +       TL + +G   +N+ T  GRSY+V  Q +  +
Sbjct: 723  FTANSPQIEIDVDRDRLAALNIDFGEALQTLGSYMGGQYVNQITQFGRSYQVYIQADNGF 782

Query: 754  RDNPGWLNNYYVKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQ--GVPMVSLGE 811
            R  P  L   YVK+  G  +PLS  +T+  +  P  +  +    +  +     P  S G+
Sbjct: 783  RATPQALTQIYVKSRDGATVPLSEFLTIRQQVGPLYITHYNLFRSIEVDSFAAPGTSTGQ 842

Query: 812  ALKTVQDIAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDP 871
             ++ ++D  ++   + F     G AR+ V  G+   + FGL + ++FLVLAA +ES+ DP
Sbjct: 843  VIEGLKDAFQKANFQRFGNGLVGLAREEVSAGTLAPLIFGLGVVVVFLVLAALYESYVDP 902

Query: 872  LVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGL 931
            L+IL+TVPL+I GAL+ L L    +++Y QVGLV LIGL SK+ ILIV++AN+    +G+
Sbjct: 903  LIILLTVPLAILGALVFLNLRGIPLDVYAQVGLVMLIGLASKNAILIVDYANE-AVAKGM 961

Query: 932  SVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFT 991
               EA  EAA +R RP++MT  + + G  PL++A GAGA SR+ +G V+  G+ + T+ +
Sbjct: 962  GYTEAALEAAKLRFRPIVMTAISSLIGFFPLVIAQGAGAASRWSLGTVVFGGLLVATVLS 1021

Query: 992  LFVLPCIYTLL 1002
            L ++P  Y +L
Sbjct: 1022 LLIVPANYVIL 1032



 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 2/207 (0%)

Query: 801  IQGVPMVSLGEALKTVQDIAREEAPEGFAFDYAGAARQYVQEG-SALWVTFGLALAIIFL 859
            + G   + +   ++    I  ++ P G           +V    S + +T   A+A++ L
Sbjct: 300  LPGSNAIDVANGIREQLAILEQQFPPGLEGKLVFDVTDFVNASLSEVLITLVQAIALVIL 359

Query: 860  VLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIV 919
            V+    + +R  L+  + +P+S+ G L  +     S+N+ T  GLV   GL+    I++V
Sbjct: 360  VIFIFLQDWRTTLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLVLATGLVVDDAIVVV 419

Query: 920  EFANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMV 979
            E   + + E G +  +A  EA  I    V+ T+  +    +P+    GA         + 
Sbjct: 420  EAITE-KIEEGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFPGATGRIYQQFALT 478

Query: 980  IATGMSIGTLFTLFVLPCIYTLLAHKA 1006
            +   + I T   L   P +  LL   A
Sbjct: 479  LTFTILISTFNALTFSPAMSALLLRPA 505