Pairwise Alignments
Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440
Subject, 1044 a.a., transport transmembrane protein from Sinorhizobium meliloti 1021
Score = 563 bits (1452), Expect = e-164
Identities = 354/1012 (34%), Positives = 569/1012 (56%), Gaps = 23/1012 (2%)
Query: 3 FTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGY 62
FT FI+RP+ A VV+ LI++ G AWN ++IR+ PQ++ +++VTT + GA+ ETI
Sbjct: 20 FTALFIRRPIFALVVNTLIVVAGLAAWNGVEIRELPQVDQPVVSVTTEFDGASPETIDRE 79
Query: 63 ITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLPQD 122
+T ++ +++ +GI ++S S S +++ D + ++ + +LP D
Sbjct: 80 VTSVIEGAVSRVQGIKGISSSSSFGRSRVTLEFSDTTDIGQAANDVRDALGRITGQLPDD 139
Query: 123 SEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVF 182
+++P + K +D+ +M ++ S MS +T + I +LA + G+A+ + G+Q
Sbjct: 140 ADEPRIVKADSDSQPIMRLALTSDTMSMDDMTLLVENEISDRLAAVEGVADVTVYGDQEK 199
Query: 183 AMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAFAA 242
R+ L+ KLAG G++ ++ A+ ++ AG + SV A+ +L++ E F
Sbjct: 200 IFRIDLNQAKLAGRGVTVANLREALSDASYDVPAGSLTSASQDISVRATADLQTPEQFEN 259
Query: 243 LPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRI 302
L L + V L DVA V +G + + +G + +GI +N +D+ + VR +
Sbjct: 260 LML----GNNVRLRDVATVTLGPDTGTSALRSNGREGIGLGIIRQAQSNTVDISEGVRSV 315
Query: 303 MPELESQ-LPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIP 361
+ + S LP+ + I D FI +I EV L AV IV +V++LFL R+ LIP
Sbjct: 316 VDAISSDILPTGTELKITSDDAVFINGAIHEVEIALFVAVFIVTLVIYLFLLDWRATLIP 375
Query: 362 VVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFD 421
+T+P+++IG + + + G+S+N+LTLLA+VLA GLVVDDAIVV+ENI R EG P
Sbjct: 376 TITMPIALIGTVAAIYLAGFSINILTLLAIVLATGLVVDDAIVVLENIVRRRAEGLGPRA 435
Query: 422 AALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLS 481
AA+ G E+ V++ T TLAAV+ P+ FL G TG LF+EF LA ++++S V+LTL
Sbjct: 436 AAVHGTLEVFFAVLATTATLAAVFVPLSFLPGQTGGLFREFGFVLAFSILLSSFVSLTLC 495
Query: 482 PMMCALLLRREQNP-SGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCLIPV 540
PM+ + +L +E + G+ R + R Y+ L A L++ +V A +
Sbjct: 496 PMLASRMLTKEPHEHDGVMQRFGR---RASAFYRVTLRACLNAPLIVFAVAAFFTAAGAL 552
Query: 541 LLKFTQNELAPNEDQGVIFMMSSSPQPANLDY----LNAYTDQFTPLFKAFPEYYSSFQI 596
++EL PNED+ + + ++PQ +L+Y L + PL K+ E + F I
Sbjct: 553 GFLTLKSELTPNEDRSQVMLRINAPQGVSLEYTQAQLRRIEEGLQPLLKS-GEISNVFSI 611
Query: 597 NGFNG-VQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSL--PGTGE 653
+G G +G L PW ERERTQ +++ + +I ++ F SL G G
Sbjct: 612 SGQGGSANSGFMVLTLAPWEERERTQGQIVADINRATSKIPSVRAFTIQANSLGIRGAGS 671
Query: 654 GLPFQFVINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQM 713
GL V N DY L D A ++ +++G+F + ++ ++ ++ V IDR +A+ +
Sbjct: 672 GLQVALVGN---DYTKLGDAAAKLVRAMEDTGRFENVRLNYEANQAQLSVTIDRERASDL 728
Query: 714 GVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYYVKNDQGQLL 773
GV + L L +L + + +EG +Y V ++P L N +VK G+++
Sbjct: 729 GVDIGGLSWALQAMLDGSSVVDIFVEGEAYPVKLLSSTEPLNDPTDLQNIFVKAGDGRIV 788
Query: 774 PLSTLITLTDRARPRQLNQFQQLNAAIIQG--VPMVSLGEALKTVQDIAREEAPEGFAFD 831
P+S++ T+ ++A QL++ QL A + ++LGEAL V+++A P G
Sbjct: 789 PMSSIATVEEKAVAPQLSRESQLRAVSLSAGLKSDLALGEALSMVEEMAEPLLPPGSRVM 848
Query: 832 YAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFL 891
A + + L+VTFG AL IIFLVLAAQFESF L+I+ TVPL + A+ + +
Sbjct: 849 PLAEAATLDENANGLFVTFGFALVIIFLVLAAQFESFVSGLIIMSTVPLGLACAVFAMIV 908
Query: 892 GVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAAIRLRPVLMT 951
+++NIY+Q+GLV L+G+++K+GILIVEFANQLRD RG VR AIE AA IRLRPV+MT
Sbjct: 909 TGNTLNIYSQIGLVMLVGIMAKNGILIVEFANQLRD-RGQDVRSAIENAANIRLRPVMMT 967
Query: 952 TAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLA 1003
A V G VPL+LASGAGA +R +G V+ G+ + + TL++ P Y ++A
Sbjct: 968 MIATVVGAVPLVLASGAGAEARIALGWVLVGGLGLAVVVTLYLTPVAYLVIA 1019
Score = 58.5 bits (140), Expect = 2e-12
Identities = 43/168 (25%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Query: 328 ASIDE----VIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSL 383
A++DE + T G A++I+ +V+ + S LI + T+PL + +F M + G +L
Sbjct: 854 ATLDENANGLFVTFGFALVIIFLVLAAQFESFVSGLIIMSTVPLGLACAVFAMIVTGNTL 913
Query: 384 NLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLAA 443
N+ + + +V+ +G++ + I++VE ++ + G+ +A+E A I + V MT+
Sbjct: 914 NIYSQIGLVMLVGIMAKNGILIVEFANQLRDRGQD-VRSAIENAANIRLRPVMMTMIATV 972
Query: 444 VYA-PIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLR 490
V A P+ +G L G + ++ +V L L+P+ ++ R
Sbjct: 973 VGAVPLVLASGAGAEARIALGWVLVGGLGLAVVVTLYLTPVAYLVIAR 1020
Score = 58.2 bits (139), Expect = 3e-12
Identities = 72/327 (22%), Positives = 139/327 (42%), Gaps = 15/327 (4%)
Query: 691 DIDLAFDKPEVV-VDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQV 749
D+ + D+ ++ +D+++AK A GV++ L L+ + T + V A
Sbjct: 190 DVTVYGDQEKIFRIDLNQAKLAGRGVTVANLREALSDASYDVPAGSLTSASQDISVRATA 249
Query: 750 ERPYRDNPGWLNNYYVKNDQGQLLPLSTLITLTDRARPR-QLNQFQQLNAAIIQGVPM-- 806
+ P N + N+ +L ++T+ D + N + + II+
Sbjct: 250 DL---QTPEQFENLMLGNNV-RLRDVATVTLGPDTGTSALRSNGREGIGLGIIRQAQSNT 305
Query: 807 VSLGEALKTVQD-IAREEAPEGFAFDYAGAARQYVQEG-SALWVTFGLALAIIFLVLAAQ 864
V + E +++V D I+ + P G ++ + + +A+ I+ LV+
Sbjct: 306 VDISEGVRSVVDAISSDILPTGTELKITSDDAVFINGAIHEVEIALFVAVFIVTLVIYLF 365
Query: 865 FESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQ 924
+R L+ +T+P+++ G + ++L S+NI T + +V GL+ I+++E +
Sbjct: 366 LLDWRATLIPTITMPIALIGTVAAIYLAGFSINILTLLAIVLATGLVVDDAIVVLENIVR 425
Query: 925 LRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGM 984
R E GL R A VL TTA + VPL G + G V+A +
Sbjct: 426 RRAE-GLGPRAAAVHGTLEVFFAVLATTATLAAVFVPLSFLPGQTGGLFREFGFVLAFSI 484
Query: 985 SIGTLFTLFVLPCIYTLLAHKASAKAP 1011
+ + +L + P +LA + K P
Sbjct: 485 LLSSFVSLTLCP----MLASRMLTKEP 507