Pairwise Alignments

Query, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

Subject, 1056 a.a., hydrophobe/amphiphile efflux-1 family RND transporter from Pedobacter sp. GW460-11-11-14-LB5

 Score =  549 bits (1414), Expect = e-160
 Identities = 346/1038 (33%), Positives = 568/1038 (54%), Gaps = 60/1038 (5%)

Query: 7    FIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQGYITQP 66
            FIQRPVL+ V+SL+I+ LG  A + L + Q+P +    + +T  YPGAN E +   +  P
Sbjct: 5    FIQRPVLSIVISLIIVFLGVLAISYLPVTQFPSISPPKVNITAEYPGANNELLIKSVVIP 64

Query: 67   LQQSLASAEGIDYMTS-VSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLPQDSED 125
            L+++L    G+ Y+ S       + I +   +G D ++    +  +   V NKLP     
Sbjct: 65   LERALNGVPGMKYIASDAGNDGEASIQVVFNLGTDPNQASLNVQNRVAAVTNKLP----- 119

Query: 126  PVLSKEAA-----DASALMYVSFYSKE--MSNPQITDYLSRVIQPKLATLPGMAEAEILG 178
            P++ +E       +++ LMY++ YSK+  M+   + +Y    +  +L  + G+  A+ILG
Sbjct: 120  PLVVREGVKITREESNMLMYINLYSKDPKMNQNFLYNYADINLLSELKRVDGVGFADILG 179

Query: 179  NQVFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSA---AGEVKG------EYVVTSVN 229
            ++ +AMR+WL P ++  + +S  +V  A+   +  ++    GE  G      EYV+    
Sbjct: 180  DRDYAMRIWLKPDRMQAYKISVDEVMKALDEQSLEASPGKTGESSGKRSQAFEYVL---K 236

Query: 230  ASTELKSAEAFAALPLKTSGDSRVL-LGDVARVEMGAENYDTVSSFDGTPSVYIGIKATP 288
             S    + E +  + L+ S +  +L L DVA V+  A  Y+  S+ +G  S  I +K + 
Sbjct: 237  YSGRFSTKEGYENVVLRASANGELLRLKDVADVDFSASAYNLYSTLNGKASAAIVLKQSY 296

Query: 289  AANPLDVIKEVRRIMPELESQ-LPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVV 347
             +N   VIK+V+  M E++S   P  L+  ++YD ++F+ ASI++VI TL EA ++V +V
Sbjct: 297  GSNASQVIKDVKAKMAEIKSSSFPKGLDYEVSYDVSKFLDASIEKVIHTLVEAFILVGLV 356

Query: 348  VFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVE 407
            VFLFLG  RS LIP + +P+S+IG   FMQ  G +LNL+TL A+VLAIG+VVDDAIVV+E
Sbjct: 357  VFLFLGDWRSTLIPAIAVPVSLIGTFVFMQFFGITLNLITLFALVLAIGVVVDDAIVVIE 416

Query: 408  NIHRHMEEGK--SPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALT 465
             +H  ME  +  S   A  +  +EI   ++++T  +A+V+ P+ F++G  G  +++F++T
Sbjct: 417  AVHAKMEHNRKLSVLKATQQAMKEIGGAIIAITFLMASVFIPVAFMSGPVGIFYRQFSIT 476

Query: 466  LAGAVIISGIVALTLSPMMCALLLRREQNPSGLAHRLDQL-------FERLKGRYQRLLH 518
            +A A+I+SGIVALTL+P +CA++L+           +D+        F +L G+Y+ +L 
Sbjct: 477  MATAIILSGIVALTLTPALCAIMLKNNHGSKKKKTIIDRFLDGFNNGFAKLSGKYELVLT 536

Query: 519  ATLDSRPVVLVFAVIILCLIPV--LLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAY 576
              +  R  +L F ++I   + V  L     +   PNEDQG+++ +  +P  + L+  +  
Sbjct: 537  KVVSRR--ILTFGILIAFCLGVWGLSGSVPSGFIPNEDQGMVYAIIQTPPGSTLERTDQI 594

Query: 577  TDQFTPLFKAFPEYYSSFQINGFNGVQTGIGG------FLLKPWNERERTQMELLPLVQA 630
            +++   + +      S   + G+  +  G G         LK W+ER+ + +E++  ++ 
Sbjct: 595  SEKLQKMCEDIDGVKSVSSLAGYEILTEGTGSNSGTCLINLKDWSERKHSAVEIIEELEE 654

Query: 631  KLEEISGLQIFGFNLPSLPGTGEGLPFQFVI---NTAGDYPALLDVA----QRIKTRAQE 683
            K + I G  I  F  P++PG G    F+  +     +GDY  +  VA    + +  R + 
Sbjct: 655  KSKSIPGATIEFFQPPAVPGYGAAGGFELRLLDKAGSGDYKKMETVANDFVKELNKRKEL 714

Query: 684  SGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSY 743
            S  F F         P+ ++D+D   A Q GVS+D    TL+T +G      F      Y
Sbjct: 715  SSVFTFYSASF----PQYMLDVDNDIAQQKGVSIDNAMNTLSTFVGSNYETSFIKYDHQY 770

Query: 744  KVIAQVERPYRDNPGWLNNYYVKNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQG 803
            KVI Q    YR  P  +    VKND+ +++P S  I +       ++ +    NA+ I G
Sbjct: 771  KVIVQALPQYRALPEDILKLSVKNDRDEMVPFSAFIKMRKVYGLSEITRHNMYNASEISG 830

Query: 804  --VPMVSLGEALKTVQDIAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVL 861
               P  S GEA+K + ++A++  P GF  D+AG ++  V  G+     F + L  ++LVL
Sbjct: 831  QSAPGYSSGEAIKAITEVAKKSLPRGFGIDWAGISKDEVSRGNEAIYIFLICLGFVYLVL 890

Query: 862  AAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEF 921
            AAQ+ESF  PL +++++P  I GA L L L     NIY QV +V LIGL+ K+ +LIVEF
Sbjct: 891  AAQYESFILPLSVILSLPAGIFGAFLFLKLLGLENNIYAQVAMVMLIGLLGKNAVLIVEF 950

Query: 922  ANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIA 981
            A Q R  +G SV +A  E A++R RP+LMT+ A + G++PL++ASG G +    IG   A
Sbjct: 951  AAQ-RHAQGASVLKAAMEGASVRFRPILMTSFAFIAGLIPLMIASGPGKIGNRTIGSAAA 1009

Query: 982  TGMSIGTLFTLFVLPCIY 999
             GM  GT+F + ++P +Y
Sbjct: 1010 GGMLFGTIFGVVIIPGLY 1027



 Score = 48.1 bits (113), Expect = 3e-09
 Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 853  ALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPL-FLGVSSMNIYTQVGLVTLIGLI 911
            A  ++ LV+      +R  L+  + VP+S+ G  + + F G++ +N+ T   LV  IG++
Sbjct: 349  AFILVGLVVFLFLGDWRSTLIPAIAVPVSLIGTFVFMQFFGIT-LNLITLFALVLAIGVV 407

Query: 912  SKHGILIVEFAN-QLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGA 970
                I+++E  + ++   R LSV +A ++A       ++  T  M    +P+   SG   
Sbjct: 408  VDDAIVVIEAVHAKMEHNRKLSVLKATQQAMKEIGGAIIAITFLMASVFIPVAFMSGPVG 467

Query: 971  VSRFDIGMVIATGMSIGTLFTLFVLPCIYTLL 1002
            +      + +AT + +  +  L + P +  ++
Sbjct: 468  IFYRQFSITMATAIILSGIVALTLTPALCAIM 499