Pairwise Alignments

Query, 436 a.a., integral membrane sensor signal transduction histidine kinase from Pseudomonas putida KT2440

Subject, 530 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  104 bits (260), Expect = 6e-27
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)

Query: 204 RLRDALTRERLFTSDVSHELRTPLMVLATSCELLMENPGLDARARSQVERVARATEEMRE 263
           R  DA   +  F + +SHE+RTP+  +    +LL  +  LD + R  V+ +  A  ++  
Sbjct: 143 RAEDASRAKSRFLAAMSHEIRTPMNAILGFAQLLRLSD-LDEKRRGHVDAIIAAGGQLMN 201

Query: 264 LVKTFLMLARAQRDEGAVASRAT-LREVADELIGVWRDTIEQKGLTLY--FDGRVSASPV 320
           L+   L L+  +     + SRAT L  + D++   W  ++ +KGLTL    D R+ A  V
Sbjct: 202 LLTDLLDLSHMETGRMRIESRATDLMPLLDQVADWWYSSVSEKGLTLQVEIDDRMPAR-V 260

Query: 321 LYNATFLQSVMGNLLRNAAHYTDSGYIRLSLE----ANGFS-----VEDSGVGIPEEQRE 371
           L +   LQ V+ N + NA  YTD G I L +     ++ FS     VED+G+GI EEQ+ 
Sbjct: 261 LTDPVRLQQVLNNFMANALRYTDRGTITLRVREISRSDSFSRLRLEVEDTGIGISEEQQA 320

Query: 372 AMFRPFVRGDERRGE---GLGLGLSLVQRICDDQGWRVTLTSTLPHGCRFQVDLS 423
            +FRPFV+ +   G+   G GLGLS+   I       + +TS    G  F  +L+
Sbjct: 321 LLFRPFVQIESDFGKDRGGWGLGLSICHNIAAAMSADIGVTSQPGAGATFHFELT 375