Pairwise Alignments

Query, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  324 bits (831), Expect = 5e-93
 Identities = 179/541 (33%), Positives = 289/541 (53%), Gaps = 20/541 (3%)

Query: 4   HAVIPFLLGA---GLLSGAP-----SAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAE 55
           +A++ F LG     LL+G       S + +S  V+C E +P  F+P         DA   
Sbjct: 2   NALLRFTLGLCSMTLLAGCGENIDHSKIRSSGFVYCGESAPTTFNPQLADNDITSDALGP 61

Query: 56  TVFNRLTQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDV 115
            ++N L   +      +  LA+ W V+  G  Y F LR  V F TT +F P+RP NADDV
Sbjct: 62  QIYNTLLTIDPETHLPVASLASSWTVNSTGLEYVFKLRPDVAFQTTPWFSPTRPLNADDV 121

Query: 116 LFTFNRMLDKDNPFRKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNL 175
           +F+F R++D  NP+ K   T++P+F  +     +  V  LD+ TVKF L+  D +F+ N+
Sbjct: 122 VFSFRRIIDPTNPYHKVGQTQYPWFKGIDFQNLLVDVSALDDLTVKFVLSRPDNSFLSNI 181

Query: 176 AMSFASIQSAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDV 235
           A S A I S EYA+QL+ + +   ++  P+GTGPF  ++Y     IR K +  YW+    
Sbjct: 182 ATSHAVILSLEYANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDLIRLKRHPQYWEGA-A 240

Query: 236 KIDNLIFAITTDASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAY 295
           K++ ++F I+   +  + KL +NEC V   P  + +  ++ + ++ +      N+ +IA 
Sbjct: 241 KVEQVVFDISQRGTGMLAKLLRNECDVLNAPISSQLPAIEKNPDIVLQTTPAMNVAFIAV 300

Query: 296 NVMDKIKGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSI 355
           N        N        +VR+AL+ A++++ I++SVY G G +A   +PPT W+Y    
Sbjct: 301 NTQHPALNDN--------RVRKALNFAINRQNILDSVYYGTGSIAFTILPPTSWAYQQDT 352

Query: 356 KDAAFDPEKAKQLLKEAGIKEGTEITLWAMPVQ-RPYNPNAKLMAEMLQSDWAKIGIKAK 414
               +D   A+ LL+EAG   G E+T+ ++PV+ + YNP+ +  AE++Q++ A IG+  +
Sbjct: 353 AQIRYDRNYAQALLREAGFATGLELTM-SVPVEPKAYNPSPRKTAELIQANLADIGVTLR 411

Query: 415 IVSYEWGEYIKRSKGGEQGAMLIGWSGDNGDPDNWLGTLYGCDA-VDGNNFSKWCYKPYD 473
           ++S +  E  + S        L GW+GD GDPDN+L  L  CD+   G N S WC   +D
Sbjct: 412 LISEDRSERQELSIRNNIDLYLSGWTGDTGDPDNFLRPLLSCDSNRAGLNVSMWCDSDFD 471

Query: 474 DLIKQAKATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNS 533
            L+  A   +    R  LY +AQ+IL ++ P+ P+AH   +   S  +   +ISPF +  
Sbjct: 472 FLLDLALEANKPRYRLNLYHQAQNILNQEFPVIPLAHGIQFTAYSKSLTGIRISPFNVQP 531

Query: 534 F 534
           F
Sbjct: 532 F 532