Pairwise Alignments

Query, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 538 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  174 bits (442), Expect = 6e-48
 Identities = 140/489 (28%), Positives = 239/489 (48%), Gaps = 54/489 (11%)

Query: 55  ETVFNRLTQFERGGTAVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADD 114
           +++F+ L  +  G T + P LA  +E+S+DGK +TF LR+GVKFH        R   A D
Sbjct: 56  KSLFDGLMDYVPGTTELRPDLAESYEISEDGKIFTFKLRKGVKFHN------GRELTAQD 109

Query: 115 VLFTFNRMLDKDNPFRKAYPTEFPYFTDMGMDK-------NIAKVEKLDEHTVKFTLNEV 167
           V ++  R++   NP  ++    F + T  G+++        ++ +   D HT++F L   
Sbjct: 110 VKYSIERVV---NPATQSPGAGF-FATIKGVEEASAGKGGELSGITVQDPHTIRFELTRP 165

Query: 168 DAAFIQNLAMSFASIQSAEYADQLLKNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNK 227
           DA F+  +A++FA +   E   ++ K+G  AD  + P+G+G F  +++    ++ F+   
Sbjct: 166 DATFLHVMALNFAHVVPKE---EVEKHG--ADFGKNPVGSGAFKLAEWTLGQRLVFERFT 220

Query: 228 DYWQPEDVKIDNLIFAITTDASVRMQKLKKNECQV--TLFPRPADIEPLKADKNLQ--MP 283
           DYW     K+D + F +  +  V + +L+  E  V     P PA    +  D N +  + 
Sbjct: 221 DYWNEGLPKLDRITFEVGQEPVVALLRLQNGEIDVPGDGIP-PAKFVEVTNDPNFKDLII 279

Query: 284 QQAGFNLGYIAYNVMDKIKGSNEANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNA 343
           +    + GY+  NV        +  P  +++VR+A++MA++K +I+  +  G    A   
Sbjct: 280 RGGQLHTGYVTMNV--------KMAPFDKVEVRKAVNMAINKDRILR-IINGRAVAANQP 330

Query: 344 MPPTQWSYDDSIKDAAFDPEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQ 403
           +PP+   Y       A+DPE AK+LL++AG+ +G    L+ M      +P  ++ A+ +Q
Sbjct: 331 LPPSMPGYAKDYAGYAYDPEGAKKLLEQAGLGDGFSTELYVMNT----DPQPRI-AQAIQ 385

Query: 404 SDWAKIGIKAKIVSYEWGEYIKRSKGGEQGAMLIGWSG------DNGDPDNWLGTLYGC- 456
            D   IGI A I S      I  + GGE+    + WSG      D  DP N+ G + GC 
Sbjct: 386 QDLKAIGITASIKSLAQANVI--AAGGEENQAPMIWSGGMAWIADFPDPSNFYGPILGCG 443

Query: 457 DAVDGN-NFSKWCYKPYDDLIKQAKATSDQAKRTE---LYQKAQHILKEQVPITPIAHST 512
            AV G  N+S +C +  D    +A A +D AK  E   L++     + E  P  PI +  
Sbjct: 444 GAVPGGWNWSWYCNEELDKKAAEADAIADPAKAAEREALWRDIYLKIMEDAPWAPIFNEE 503

Query: 513 VYQPMSAKV 521
            +   S ++
Sbjct: 504 RFTIRSERI 512