Pairwise Alignments

Query, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  505 bits (1300), Expect = e-147
 Identities = 254/533 (47%), Positives = 354/533 (66%), Gaps = 8/533 (1%)

Query: 1   MRHVTCLSALLALGLVSQSPVLLANNLVFCSEGSPAGFDTAQYTSATDNDAA-EPIYNRL 59
           M+ +T L A  A+  +  +    +   VFCSEGSP GFD   YT+ T  DAA   +Y+RL
Sbjct: 1   MKKLTTLLAATAIATL-MAGTAWSKTFVFCSEGSPEGFDPGLYTAGTTFDAAAHTVYSRL 59

Query: 60  VEFERGGTAVHPALATHWEVSDNGLRYTFHLREGVRFHSNKAFSPSRTFNADDVLFTFNR 119
           +EF++G T   P LA  W +SD+GL YTF LR GV+F + + F+P+R  NADDV+F+  R
Sbjct: 60  LEFKKGTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIER 119

Query: 120 MLDKGHRFRQAYPT--EFPYFNGMGLDKNIARVEKTDPLTVVFTLNTVDAAFIQNLAMSF 177
                H +   Y T   + YF GMGL + +  VEK D +TV   L   +A F+ NLAM F
Sbjct: 120 QWKSDHPWH-GYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPF 178

Query: 178 ASILSAEYAEQLLASGRPSDINQQPIGTGPFVFQRYQKDSQIRYKGNKDYWAANEVKIDN 237
           ASI+S EYA++L A G+ + +NQ P+GTGPF F  YQ+D+ IRYK + D+W   + KID+
Sbjct: 179 ASIMSKEYADKLQAEGKMNQLNQMPLGTGPFAFVGYQQDAVIRYKAHPDFWGGKQ-KIDD 237

Query: 238 LVFSINTDPSVRIQKLRRNECQVTLHPRPADLPALKADSTLQVLQQPGFNLGYIAYNTQH 297
           LVF+I TD +VR QKL+  EC +  +P  AD+ A+KAD  L+V++Q G N+ Y+AYNT  
Sbjct: 238 LVFAITTDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVAYLAYNTTQ 297

Query: 298 PPFDRLEVRQAMDMAVNKEAILQAVYQDAGQRAVNAMPPTQWSYDDSIKDAPYAPEKARQ 357
           PPFD++EVR+A++ A+NK+AI+ AV+Q     A N +PPT WSY++ I+D  Y PE A++
Sbjct: 298 PPFDKVEVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDDTYDPEAAKK 357

Query: 358 LIQQAGVKPGTEITLWAMPVQRPYNPNAKLMAEMLQADWSKLGFKVRIVSYEWGEYLKRM 417
           +++ AGVK    + +WAMPV RPY  NA+  AE++QAD++K+G KV IVSYEW EYL++ 
Sbjct: 358 MLEDAGVK-DLSMKVWAMPVARPYMLNARRAAELMQADFAKVGVKVEIVSYEWAEYLEKS 416

Query: 418 KNGEHDIALI-GWTGDNGDPDNWLGTLYSCDAIGSNNYSQWCDPQYDSLVKQAKQVTDRT 476
           K  + D A+I GWTGDNGDPDN+L TL  CDA+G NN +QWCD ++D LV +AK+ +D  
Sbjct: 417 KAKDRDGAVILGWTGDNGDPDNFLDTLLGCDAVGGNNRAQWCDKEFDELVTKAKEASDVA 476

Query: 477 QRTALYQQAQQRLKQQVPITPVAHSIVSQPLSVKVSQFKVSPFGRNDFSGVSV 529
           +RT LY++AQ   K++ P   + HS+   P+   V  F  SP G   F GV +
Sbjct: 477 ERTKLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSPLGDFAFDGVDI 529