Pairwise Alignments

Query, 459 a.a., glycine-glutamate dipeptide porin from Pseudomonas putida KT2440

Subject, 419 a.a., outer membrane porin, OprD family. from Pseudomonas stutzeri RCH2

 Score =  146 bits (369), Expect = 1e-39
 Identities = 125/433 (28%), Positives = 196/433 (45%), Gaps = 41/433 (9%)

Query: 30  LPLTLKSSSE----QAQASGFIDGQSLSGSTRNWYARERAARAPLWKYYKNDGTRHDTHS 85
           L LT+ ++S     QA   GFID  + +   RN+Y           + + +   +     
Sbjct: 9   LALTIAAASAFPAVQAAEGGFIDDSTATLQARNYYFS---------RDFSDIVGKSQQSK 59

Query: 86  RENWVQGTILNYSSGFTQGTVGFAVEAAGYNAIALQQSREAIAGPNNRTLTHSDGDPVGQ 145
            E W QG ILN+ SG+TQGTVG  ++A G   + L  SR+ +           DG     
Sbjct: 60  AEEWGQGFILNFKSGYTQGTVGVGIDAIGLLGLKLDSSRDRVG--TGLLPVGDDGRAADD 117

Query: 146 WSKLGLGNIKARVSNTTLTLGRQSVDTPMIAYIGNRALPSSFQGAFLHSAEFDNLSIDLG 205
           +S+LG   +K R+SNT L +G    + P++ +   R LP ++QGA + S E D L++  G
Sbjct: 118 YSRLGAA-LKVRLSNTELKIGELQPNLPVLTFSDIRLLPPTYQGASIVSNEIDGLTLQGG 176

Query: 206 TFDRVSPRTEQSLSKFRSEYSATGVE--TDRASTAGINYQPFKSLSTSLYA--TKVEDFW 261
                S R E    + R+    T     +D  + AG +Y  F +  TSL A   ++ED +
Sbjct: 177 HLRSTSLRNEAGDDRMRAMLGRTPQTGLSDAFNYAGGDY-AFNAKRTSLSAWYAQLEDIY 235

Query: 262 NQYYFGANH--VLGDSAVLSLSTGLNYYKTVDAGSQKMGKIDNDTYSLSLGLTHQAHTLS 319
           NQ + G  H   LG     +L   L +Y + + GS+  G IDN  +   L      HT  
Sbjct: 236 NQRFIGLKHSEPLGS---WTLGANLGFYDSQEDGSKLAGTIDNQAFYSLLSAKRGGHTFY 292

Query: 320 ASWQQVNGNEYFDYLHETNGIFLANSLLS-DFNGPNEKSLQLSYVLNMAPYGVPGLKFNL 378
             +Q + G+  F  +   N   L N + + +F   +E+S Q  Y  + A  GVPGL   +
Sbjct: 293 VGYQAIYGDNAFPRVF-ANVTPLGNEVPTYEFAEKDERSWQARYDYDFAAVGVPGLVATV 351

Query: 379 YNARGWGIDGTHYRGTAYDVNGLDGETHYEWGIGTSYALQSGPLKDTSIRATYTTHRASK 438
                  +D           NG +G    E  +   Y +QSGPLK+  +R     + A++
Sbjct: 352 RYITSDNVDTD---------NGFEGNAR-ERDLDLGYTVQSGPLKNVGVR---IRNVAAR 398

Query: 439 AQGDGSLDEFRVV 451
           +     +DE R++
Sbjct: 399 SNYRSDIDENRLI 411