Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 533 a.a., Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  479 bits (1233), Expect = e-139
 Identities = 243/517 (47%), Positives = 332/517 (64%), Gaps = 4/517 (0%)

Query: 17  RPLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLVDFK 76
           +PL L L AL+       AA  LV C+EASP GFD  QYT+    DASAETVFNRL  FK
Sbjct: 7   KPLLLTL-ALISSAPMAQAATTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFK 65

Query: 77  PGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQLDP 136
            G TE++P LA RWD+SADGL YTFHLR+GVKFHTTDYF P+RD NADDVL++  R LDP
Sbjct: 66  RGGTEVEPGLATRWDVSADGLVYTFHLREGVKFHTTDYFSPSRDFNADDVLFTFQRLLDP 125

Query: 137 NHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSIYSA 196
            HP+        PYF  MG    +KSV K DEHTV   L+  +A F++++AM F S+ SA
Sbjct: 126 QHPFRQAYPTESPYFTDMGLNTTIKSVEKVDEHTVRFNLNNVDAAFVQNLAMSFASVQSA 185

Query: 197 EYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKP-PADALVFAIA 255
           EY  QLLK GK  +LN KPIGTGPF+F+RY KD+Q+R+  N  Y++ +    D L+F+I 
Sbjct: 186 EYAAQLLKEGKAGDLNQKPIGTGPFVFKRYQKDSQIRYAGNTAYWKPEDVKLDNLIFSIT 245

Query: 256 IDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYLNDV 315
            D+ VRLQKL+  ECQV+ YP+P D+  ++QDP L+V +      G++A N  H  L+ +
Sbjct: 246 PDAAVRLQKLKRGECQVSGYPRPADIEVMEQDPNLQVLKQPGFNLGFLAYNVTHPPLDQL 305

Query: 316 RVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLSQA 375
           +VR+A++MA D+   +  ++     L   N  PP    ++ + ++ P D+ KA+ALL +A
Sbjct: 306 KVRQALDMAIDKPAIIKAVYQSAGQL-AQNALPPAQWSFDPNIKDAPHDVTKAKALLKEA 364

Query: 376 GVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNGEA 435
           GV  GT I L+       +NPN R+SA+M+Q D  +IG+K +I   EW E ++RAKNGE 
Sbjct: 365 GVAPGTTIDLWAMTVQRASNPNARMSAQMIQQDWAKIGIKANIVSYEWGEYIKRAKNGEH 424

Query: 436 DLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDERARL 495
           D +  GW GDNGDPDN+L  L SC AVK G NYA+WC+P + +LI +A+   D  +R  L
Sbjct: 425 DAMIYGWTGDNGDPDNWLGVLYSCAAVK-GSNYAKWCDPAYDQLIQQAKVSTDRQQRIDL 483

Query: 496 YNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINP 532
           Y +A K+   + P   +A+  +F  +   V  + ++P
Sbjct: 484 YRQAQKILKQQVPITPIANSTVFQPVNRKVVDFKLSP 520