Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  464 bits (1195), Expect = e-135
 Identities = 249/522 (47%), Positives = 325/522 (62%), Gaps = 5/522 (0%)

Query: 14  MKSRPLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLV 73
           MK     LA  A+    A    +K  V C+E SPEGFD   YT   T DA+A TV++RL+
Sbjct: 1   MKKLTTLLAATAIATLMAGTAWSKTFVFCSEGSPEGFDPGLYTAGTTFDAAAHTVYSRLL 60

Query: 74  DFKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQ 133
           +FK GTTE +P LAE W IS DGL YTF LR GVKF TT++F PTR+LNADDV++S+ RQ
Sbjct: 61  EFKKGTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIERQ 120

Query: 134 LDPNHPWHDKTSVG-YPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTS 192
              +HPWH   + G + YF  MG  ELL+SV K D+ TV I L R EAPFL ++AM F S
Sbjct: 121 WKSDHPWHGYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPFAS 180

Query: 193 IYSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALVF 252
           I S EY D+L   GK  +LN  P+GTGPF F  Y +DA +R+K +PD++ GK   D LVF
Sbjct: 181 IMSKEYADKLQAEGKMNQLNQMPLGTGPFAFVGYQQDAVIRYKAHPDFWGGKQKIDDLVF 240

Query: 253 AIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYL 312
           AI  D+ VR QKL+A EC +  YP   DV ++K DP LKV E   L   Y+A NT     
Sbjct: 241 AITTDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVAYLAYNTTQPPF 300

Query: 313 NDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALL 372
           + V VRKA+N A ++Q  VD +F +G A    NP PPTM  YN H ++   D + A+ +L
Sbjct: 301 DKVEVRKALNKAINKQAIVDAVF-QGQATPATNPIPPTMWSYNEHIEDDTYDPEAAKKML 359

Query: 373 SQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKN 432
             AGV +   + ++      P   N R +AE++QAD  ++G+K++I   EWAE L ++K 
Sbjct: 360 EDAGVKD-LSMKVWAMPVARPYMLNARRAAELMQADFAKVGVKVEIVSYEWAEYLEKSKA 418

Query: 433 GEAD-LVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDE 491
            + D  V  GW GDNGDPDNFL  LL CDAV  G N A+WC+ +F EL+++A+E  D  E
Sbjct: 419 KDRDGAVILGWTGDNGDPDNFLDTLLGCDAV-GGNNRAQWCDKEFDELVTKAKEASDVAE 477

Query: 492 RARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPL 533
           R +LY EA  V+  E PW ++ H      MR NVEG+V +PL
Sbjct: 478 RTKLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSPL 519