Pairwise Alignments

Query, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 529 a.a., extracellular solute-binding protein, family 5 (NCBI) from Rhodospirillum rubrum S1H

 Score =  485 bits (1249), Expect = e-141
 Identities = 243/531 (45%), Positives = 339/531 (63%), Gaps = 3/531 (0%)

Query: 14  MKSRPLRLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAETVFNRLV 73
           M+   +  A   +L   A+   AK LV C+E SPEGF+   YTT  T DA+++ +F++LV
Sbjct: 1   MRKIVIGAASAVILAMAASGAQAKTLVYCSEGSPEGFNPAFYTTGTTFDATSKNIFDKLV 60

Query: 74  DFKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQ 133
            FK GTTEI+P LAE W++S DG TYTFHLR+GV FH +D FKPTR  NADDV+WS  RQ
Sbjct: 61  LFKRGTTEIEPGLAESWEVSPDGKTYTFHLRKGVTFHDSDIFKPTRQFNADDVIWSFERQ 120

Query: 134 LDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEHTVVITLSRPEAPFLRDMAMGFTSI 193
           L  +HP+H  +   Y YFE M    LL+ + K D++TVV  LSRPEAP L ++AM F SI
Sbjct: 121 LKKDHPYHAVSGGTYDYFEGMSMNTLLEKIEKVDDYTVVFHLSRPEAPMLANLAMDFASI 180

Query: 194 YSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYFRGKPPADALVFA 253
           +SAEY D+++K+G    ++ KPIGTGPF+F+ Y KDAQ+R++ NP Y++GK   D LVF 
Sbjct: 181 FSAEYADKMMKAGTPEVVDQKPIGTGPFMFRGYQKDAQIRYEANPTYWQGKAAIDRLVFV 240

Query: 254 IAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMNTQHKYLN 313
           I  D++VR  KL+A EC V  YP P D+ ++K D  + +   E L  GY+A N + K  +
Sbjct: 241 ITPDASVRYAKLKAGECHVMPYPNPADLEAMKTDKAVNLMHQEGLNVGYLAYNVEKKPFD 300

Query: 314 DVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLDKARALLS 373
           DVRVRKA+N+A D++  +D ++ +G      NP PPT+  YN   ++   D   A+ LL+
Sbjct: 301 DVRVRKALNLAIDKKAIIDAVY-QGAGTAATNPIPPTIWSYNKAVKDDAFDPAAAKKLLA 359

Query: 374 QAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLDIRVMEWAEMLRRAKNG 433
           +AGV +    T++      P NPN R  AE+LQA+ K +G+  +I   EW E L+RAK G
Sbjct: 360 EAGVKD-LKTTIWAMPVQRPYNPNARRMAEILQANWKAVGVDAEITSYEWGEYLKRAKAG 418

Query: 434 EADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQELISRAREVIDNDERA 493
           E +    GW GDNGDPDNFL+ LL CDA+  G NYARWC+  F+ LI +A+     +ER 
Sbjct: 419 EHETALFGWTGDNGDPDNFLAVLLGCDAI-PGNNYARWCDKSFENLIQKAKIATSQEERV 477

Query: 494 RLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLTNNNFATTKVK 544
           +LY EA  ++ ++ PW ++AH  ++  +R  V  Y I+PL  + F    +K
Sbjct: 478 KLYEEAQVIFKEQAPWATIAHSVVYEPIRKEVIDYKIDPLGGHIFYGVDLK 528