Pairwise Alignments

Query, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 345 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  155 bits (392), Expect = 1e-42
 Identities = 90/327 (27%), Positives = 167/327 (51%), Gaps = 18/327 (5%)

Query: 5   LLAPLMLAASVASAAETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLDGKLMT 64
           L A  +   +  +  + +  YNWS Y+  + L++F + +GI   Y  Y+SNE++  KL T
Sbjct: 10  LCAAALFTTNAMAKDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKT 69

Query: 65  GNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQYGFPYL 124
             +GYD+V PS +F+++  +   L+ +D SKL ++ +L+P  L   +  DPGN++  PY+
Sbjct: 70  QGAGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFKDLDPNYLN--KPFDPGNKFSIPYI 127

Query: 125 WGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLPIALHYL 184
           WG+TGIG N D +     D   + +W  ++  ++  +L      ++D+  E+  IAL  L
Sbjct: 128 WGATGIGINTDML-----DKKSLKNWGDLWDAKWAGQL-----MLMDDAREVFHIALSKL 177

Query: 185 GLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVLQAKNRA 244
           G   ++ +PK+ + A   L K+ P +  F+S         G++ + + ++G    A+   
Sbjct: 178 GYSPNTTNPKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMAR--- 234

Query: 245 DEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANISNHVQYA 304
                G  +    P++G   W D +++P  A + +A +  +++LL+PE  A I+  + Y 
Sbjct: 235 ---QEGAPIQIIWPEKGTIFWMDSISIPAGAKNIEAAHKMIDFLLRPENAAKIALEIGYP 291

Query: 305 NGNLKADGLVDPAMKGNTMIYPSDEVM 331
                A  L+      +  IYP   V+
Sbjct: 292 TPVKTAHDLLPKEFANDPSIYPPQSVI 318