Pairwise Alignments

Query, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 358 a.a., extracellular solute-binding protein family 1 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  166 bits (420), Expect = 9e-46
 Identities = 106/356 (29%), Positives = 179/356 (50%), Gaps = 20/356 (5%)

Query: 5   LLAPLMLAASVASAAETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLDGKL-M 63
           L A L    +VA+  + + +YNWS YV    L  F + +GI   Y  Y+SNE +  K+ +
Sbjct: 22  LAATLFAGPAVAAEEKVLHVYNWSEYVPQSVLDRFTKETGIKVVYTTYESNEAMYAKVKL 81

Query: 64  TGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQYGFPY 123
               GYDVV PS +F++       L R+DKSKL N+ NL+P +L   +  DPGN+Y  PY
Sbjct: 82  LKGVGYDVVVPSTYFISMMRDDGLLARIDKSKLKNFKNLSPKVLN--QPFDPGNEYSVPY 139

Query: 124 LWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLPIALHY 183
           +WGS G+  N   V     D A + SW+ + +PE+  K     V + D+  + + +AL  
Sbjct: 140 MWGSAGLMVNRKVV-----DPASITSWNDLNRPEFAGK-----VILSDDQRDSMGVALKA 189

Query: 184 LGLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVLQAKNR 243
           LG   +S +  + + A + L K+ P +  F  +       + ++   + ++GD   A   
Sbjct: 190 LGYSVNSTNEAEIKAAYEWLKKLLPAVRVFDVTASKQAFISEEVAAGLIWNGDAYIA--- 246

Query: 244 ADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANISNHVQY 303
           A E  N V   Y  P+EG P+W D +A+PV A  +   + ++++LL+P+V         Y
Sbjct: 247 ASENENLV---YVYPREGVPLWVDSLAIPVGAKHKDNAHKFIDFLLRPDVAKECVEEYNY 303

Query: 304 ANGNLKADGLVDPAMKGNTMIYPSDEVMGKLYALEAMPAKIDRIRTRIWTSIKAGN 359
           +  N+ A  ++ P +  + +  PSD  +       ++   ++ I  + W  +K G+
Sbjct: 304 STPNVGAQKILSPELAKSRITSPSDADLKNAEFTNSVGNALE-IYEKYWEMLKTGS 358