Pairwise Alignments

Query, 247 a.a., putative Glycine betaine/carnitine/choline ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 357 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score = 94.4 bits (233), Expect = 3e-24
 Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 2/175 (1%)

Query: 56  LVLVLASMAAALAVGIPAGIALSRPHRVDKAERFMQFFNVGNTIPPLAVLAIALSILGIG 115
           L LVL S+   +A+G+P+GI ++R  R+ K  R     +   T P    L   + + GIG
Sbjct: 133 LSLVLTSVMFCIALGLPSGILMARSDRLAKLSR--PLLDAMQTTPAFVYLVPIVMLFGIG 190

Query: 116 AGPAIFALFLASLLPIVRNTYEGLKNVPASLKEAATGIGMTPRQQLWQVELPNAVPIIVG 175
             P +    + +L P++R T  G++ VP  L EAA   G +  Q L +V+LP A+P I+ 
Sbjct: 191 NVPGVVVTIIFALPPLIRLTNLGIRQVPEDLVEAARSFGASKTQLLTKVQLPLALPTIMA 250

Query: 176 GVRVALALNVGTAPLAFLIGANSLGSLIFPGIALNNQPQLLLGAACTALLALVLD 230
           G+   L L +    +A +I    LG ++  GI   +     +G     LLA+++D
Sbjct: 251 GINQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVAIVLLAILID 305