Pairwise Alignments

Query, 313 a.a., putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 305 a.a., substrate-binding region of ABC-type glycine betaine transport system from Marinobacter adhaerens HP15

 Score =  117 bits (294), Expect = 3e-31
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 15/303 (4%)

Query: 9   KRMKKRIALLLGAALLFAGFAQAAEKPLIRIGARVFTEQTVLAEITAQYLRANGFDVRVI 68
           K + +R A L+  A + +G   AA+ P++ + +++ TE +VL ++  Q L   G  V   
Sbjct: 4   KSLLRRTAALI--AFVMSGSVMAAD-PVV-VSSKIDTEGSVLGQMVLQSLEGAGIPVENR 59

Query: 69  GGLG-SSLARQAQETGQLDLMWEYTGVSLVSYNHID-ERMPSAEATYAKVKELDAKK-DL 125
             LG +S+ R A + G++D+  EYTG +   ++  D +    A+  Y +   LD +  ++
Sbjct: 60  LQLGGTSIVRNAIKAGEIDIYPEYTGNAAFFHDQADLDIWKDADKAYQEAARLDKEAHNI 119

Query: 126 IWLTPSKFSNTYALGLPKQVAEAYPQINSISDLNQVLRDERKRNHLVALDTEFANRPDGL 185
           +WL P++ +NT+A+ +   +A     + ++ DL   + +        A   EF      L
Sbjct: 120 VWLEPAEANNTWAMSVRGDLAREN-NLATLEDLADYINEGGAFKF--AASAEFVESASAL 176

Query: 186 VGLKEMYDLQVGRANIRQMDAG-----LVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLED 240
              +E Y  ++    +  +  G     L   A++NN V   + Y TDG L A +LK++ED
Sbjct: 177 PAFQEAYGFKLESDQLLILSGGNTAATLRAAALNNNDVNGAMTYGTDGGLDALDLKVMED 236

Query: 241 DKHYFPDYTAAPVVRKAVLDANPQLVALLKPLAEQLDDETMRQLNAKVDVDHQNPTAVAA 300
                P Y  AP+VR  VL+A PQ+  +L P+ E LD ET+++LN +V V+      VA 
Sbjct: 237 TAGVQPVYQPAPIVRGEVLEAYPQIREVLTPIFESLDLETLQRLNGQVAVNGVPADTVAR 296

Query: 301 AFL 303
            +L
Sbjct: 297 DYL 299