Pairwise Alignments

Query, 335 a.a., Transcriptional regulator, Cro/CI family from Pseudomonas putida KT2440

Subject, 260 a.a., transcriptional regulator, XRE family from Synechococcus elongatus PCC 7942

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 24/248 (9%)

Query: 17  GELLRLAREKRDWSQAEVARKLNLTVSSLNHVETGAFDKLPGHTFARGYIRAYAKLMDLD 76
           G  LR ARE +    A VA +  +  S L  +E+G   +LP   F +G+IR YA+ + LD
Sbjct: 15  GAELRAAREAQGLDLAAVAAQCRVRSSYLEAIESGEVQRLPEPVFVQGFIRTYARSLGLD 74

Query: 77  ------QAALVDAFDRYTGTHAKGSDVHSLGRIEEPVRLSHNILRGVSLLLLVAVVGGGF 130
                   +L D     T   A  +   S   I  P + S  +L G+ ++++ A+ G G 
Sbjct: 75  PDTLLADLSLADIHLAATPATAAATQ-RSKVAIALPSKASLGLL-GLVVVIVAAIAGTGV 132

Query: 131 FWWQDQGSLRGKELAKIALEHVEVESADGTTQIHPLDEPEDQAVSAGQQPESAPLAL--E 188
             W  +  +     A         E+A  TT + P  EP   A+ A + P  A +++  E
Sbjct: 133 TVWNWRQQIAFAPTATAPEPPPPPEAALSTTPLEP--EPRTVAI-AFRGPAWAEISVDGE 189

Query: 189 QGAAEQPAAAEQAPVSSEATIATAPVQP--------APAASPAPVTPPVQ---ATAAPAP 237
              +    A +Q   S +  +   P +P          AA P      VQ    +    P
Sbjct: 190 VVFSGMGTAGQQLSFSPKQEVTINPGRPDLIWLSRAGQAAQPLGTISQVQLYRISVQADP 249

Query: 238 APAPAPAV 245
           +  P PAV
Sbjct: 250 SSEPNPAV 257



 Score = 36.6 bits (83), Expect = 7e-07
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 231 ATAAPAPAPAPAPAVAAVEPAAVPAGSAKVAIQFTADCWTQVSDGNGKVLFSAIKRKGDN 290
           A  A AP P P P  AA+    +      VAI F    W ++S  +G+V+FS +   G  
Sbjct: 144 APTATAPEPPPPPE-AALSTTPLEPEPRTVAIAFRGPAWAEIS-VDGEVVFSGMGTAGQQ 201

Query: 291 LELTGKPPFAVRLGFARGAQVSYNGQA 317
           L  + K    +  G      +S  GQA
Sbjct: 202 LSFSPKQEVTINPGRPDLIWLSRAGQA 228