Pairwise Alignments

Query, 255 a.a., Type IV pili biogenesis protein PilF from Pseudomonas putida KT2440

Subject, 359 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 56.6 bits (135), Expect = 7e-13
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 15/213 (7%)

Query: 38  AGRAYVQLGLGYLQQGLTEQAKAPLGKALALDDQDVDAHAALAVVFQAQGEPALAEAHFR 97
           A  AY  LG     +   EQ+       L LD++  +A+  LA V Q +G    A   ++
Sbjct: 112 AATAYANLGEYAAAERYYEQS-------LRLDNKRAEAYRGLATVQQRRGNLVGAINTYQ 164

Query: 98  KALLISRGDTRIRNNYGSFLYAQGRFAEAKQMFRLASADTLYPERSRVYENLGLTALKLE 157
           +   +   + + RN  G     Q +F  A Q+  L +A  L P  + +Y NL +  L L 
Sbjct: 165 RWQQLEPNNWQPRNEMGKIYLQQRQFTNALQV--LQAATRLAPREADIYSNLAIAQLGLN 222

Query: 158 RRDQAHAYLLKALQLNQRQPKALLEMAELSYENRHYVPARDYYDRFSQLSDHDARSLLLG 217
               A   L  ++ L+ R P+ LL+  ++         A   Y R  +L+ + A++L   
Sbjct: 223 NPRAALTSLQSSISLDPRNPRTLLKAGDIYLVLGDREAANRNYRRAFELNRNSAKTL--- 279

Query: 218 SRLARVFDEQG--TLAELG-QQLQRLYPGTPEY 247
            R  ++  +QG  TLA +  +   RL P  P++
Sbjct: 280 DRYTQILLDQGDATLATVYLRDALRLEPRNPDF 312



 Score = 27.3 bits (59), Expect = 4e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 50  LQQGLTEQAKAPLGKALALDDQDVDAHAALAVVFQAQGEPALAEAHFRKALLI--SRGDT 107
           L QG    A   L  AL L+ ++ D H  L + + A+G    A +   +A L+   RGD+
Sbjct: 287 LDQGDATLATVYLRDALRLEPRNPDFHLRLGLAYLARGLKPEARSSLNQAALLYQQRGDS 346



 Score = 25.8 bits (55), Expect = 0.001
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 40  RAYVQLGLGYLQQGLTEQAKAPLGKALALDDQDVDAHAALAVVFQAQGEPALAEAHFRKA 99
           R  ++ G  YL  G  E A     +A  L+            +   QG+  LA  + R A
Sbjct: 243 RTLLKAGDIYLVLGDREAANRNYRRAFELNRNSAKTLDRYTQILLDQGDATLATVYLRDA 302

Query: 100 LLISRGDTRIRNNYGSFLYAQGRFAEAKQMFRLASADTLYPER 142
           L +   +       G    A+G   EA+    L  A  LY +R
Sbjct: 303 LRLEPRNPDFHLRLGLAYLARGLKPEARS--SLNQAALLYQQR 343