Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 315 a.a., protein-export membrane protein SecF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 13/167 (7%)

Query: 447 IGPSLGADNITKGIDASLWGMLFVSLFIIAIYRAF------GVLATIALAGNMVLLLALM 500
           +GP +G +   +G  A L     V+L  I IY AF         A  ALA ++++ L + 
Sbjct: 126 VGPQVGKELAEQGGLAVL-----VALICIMIYIAFRFEWRLATGAVAALAHDVMVTLGVF 180

Query: 501 SLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEI--AAGMSVQRAIHEGFNRAYSAI 558
           SL      L  +AG++  +G +++  +++F R+RE          +  ++    +  S  
Sbjct: 181 SLTQMEFDLTVLAGVLTVVGYSLNDTIVVFDRVRENFLKMRKSEPEEVVNVSITQTMSRT 240

Query: 559 VDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAL 605
           +    TTL+V   LF  G   + GFA  + LGI    +++V V   L
Sbjct: 241 IITMGTTLVVVVALFLSGGSMIHGFAAALLLGISVGTYSSVYVATYL 287