Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 1087 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.8 bits (133), Expect = 9e-12
 Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 8/140 (5%)

Query: 466  GMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALM---SLLGATLTLPGIAGIVLTMGMA 522
            GM+ + L ++A +R++ ++  I +A   + ++ +M   +LLGA  T   + G++   G+ 
Sbjct: 932  GMIAIYLLVVAQFRSY-LVPLIIMAPIPLTVIGVMPGHALLGAQFTATSMIGMIALAGII 990

Query: 523  VDANVLIFSRIREEIAAGMSVQRA-IHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVK 581
            V  ++L+   I +E AAG+  +RA IH G  RA   ++ A    +   G LF +      
Sbjct: 991  VRNSILLVDFINQETAAGVPFERAVIHSGAVRAKPIMLTALAAMI---GALFILDDPIFN 1047

Query: 582  GFAVTMSLGIFTSMFTAVMV 601
            G A+++  GIF S    ++V
Sbjct: 1048 GLAISLIFGIFISTLLTLIV 1067