Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 532 a.a., protein-export membrane protein SecD (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  295 bits (756), Expect = 3e-84
 Identities = 191/514 (37%), Positives = 285/514 (55%), Gaps = 51/514 (9%)

Query: 116 RNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV---RYRSLPQ 172
           R L  + + LGLDL GG+H  L VD+DKA+   +     ++++  R++ +   R R LP 
Sbjct: 37  RFLPDNRISLGLDLMGGIHLTLGVDVDKAVENSLSQMGQDIRSSAREKDIFILRPRILPG 96

Query: 173 QDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAKV--AEIREYS 230
                +L  A  A R+Q   ++ K F    +      +   LR   T  K     I + +
Sbjct: 97  DRVEFVLAKA--AQRDQLGEMLAKQFPQLAVGAPVEIDGGQLRYVATLKKEQRTHIEDMA 154

Query: 231 IKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAE 290
           + Q + T+RNR+++ GVAEP +++Q  +RI V+LPG+ D A A +I+GKTA+LEFR   +
Sbjct: 155 LDQAVKTIRNRIDQFGVAEPDIRKQQDHRIQVQLPGLADPARAIQIIGKTAHLEFRIVRD 214

Query: 291 P--------GASKATTEVFEF-REGGRSAA------VERGLIITGDQVTDAQASFDEHGR 335
                    G      +V    R GG  +A      +++ +++TG+ V DA+  FD+  +
Sbjct: 215 DVDPEKLAKGLVPPGVDVLPMMRRGGDGSAGEVPVALDKEILLTGENVADARPGFDQFNQ 274

Query: 336 PQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEE 395
             V +  +  G  +  R T  NV + +A++                             +
Sbjct: 275 AYVMLTFNSRGAAIFERVTGENVRKRLAIVL----------------------------D 306

Query: 396 KKIISLATIQSPL-GSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454
            K+ S  +IQ  + G +  ITG     E+ +LA++LRAG L AP+   EERT+GPSLG +
Sbjct: 307 GKVYSAPSIQEKIAGGRASITGHFTTEEAQDLAIVLRAGSLPAPVNVLEERTVGPSLGQE 366

Query: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514
           +I  GI A   G   V +F I  Y A G +A   L   ++L+LA M+  GATLTLPG+AG
Sbjct: 367 SIDSGILAGQVGGAAVVVFTILYYGASGAIAVGMLCFTILLILAGMAGFGATLTLPGLAG 426

Query: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574
           I LT+GM VDANVLI+ RIREE+  G++   AIH GF+RA  +I D+NLTT++   IL+ 
Sbjct: 427 IALTIGMGVDANVLIYERIREELRRGLTPLAAIHAGFDRAMLSITDSNLTTVIAAAILYQ 486

Query: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNL 608
            GTGPV+GFAVT++LGI  SMFTA+ V+RA+ +L
Sbjct: 487 FGTGPVRGFAVTLTLGILASMFTAIFVSRAVFDL 520