Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 1038 a.a., cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 5/129 (3%)

Query: 476  AIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIRE 535
            ++   F +L TI LA  +V  + L  + G T+ + G+ GIV+  G+AV+ ++++  RI +
Sbjct: 890  SLLHPFTILLTIPLA--VVGAILLFFITGTTINMMGVIGIVMLGGIAVNNSIILVDRINQ 947

Query: 536  EIAAGMSVQRAIHEGFNRAYSAIVDANLTTLL-VGGILFAMGTGPV--KGFAVTMSLGIF 592
               AGM +  AI E   +    I+   LTT+L +  + F+ G G       A+ +  G+ 
Sbjct: 948  LSQAGMELTDAIVEAGQQRIRPIIMTTLTTILAMLPMTFSFGEGASLRSPMAIAVIGGLI 1007

Query: 593  TSMFTAVMV 601
            TS   ++MV
Sbjct: 1008 TSTLMSLMV 1016



 Score = 50.4 bits (119), Expect = 4e-10
 Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 6/160 (3%)

Query: 462 ASLWGMLFVSLFIIAIYRAFG--VLATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTM 519
           +++ G++   + +    R  G  ++ ++A+  ++V    LM   G +L +  + G+ L  
Sbjct: 355 SAVLGVILAIVVLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGA 414

Query: 520 GMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVG-GILFAMGTG 578
           GM VD  +++   I      G+S++ A   G     +A++ + LTT++V   I++  G  
Sbjct: 415 GMLVDNAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGAS 474

Query: 579 P--VKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIK 616
               K  A T++  + +S+F A++V   ++ +   G+ +K
Sbjct: 475 GELFKDQAWTVTFSLVSSLFVAILVI-PMLYIQLSGKKVK 513