Pairwise Alignments

Query, 620 a.a., Sec Translocation Complex SecD subunit from Pseudomonas putida KT2440

Subject, 624 a.a., preprotein translocase subunit SecD (RefSeq) from Shewanella sp. ANA-3

 Score =  420 bits (1079), Expect = e-121
 Identities = 255/636 (40%), Positives = 376/636 (59%), Gaps = 43/636 (6%)

Query: 1   MLNKYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVNQADL-DRVSKALV 59
           +LN Y  WKY ++++ ++V    + P  Y +D AVQ+ GA + L +   +L D++    V
Sbjct: 9   LLNHYSAWKYLVLIVTIIVMLFSALPTWYGEDAAVQV-GAKAGLNLTPIELRDKLKAQGV 67

Query: 60  DAK-IAVKGASLG-----EKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQ 113
           + K I VK A  G     E G  LI L +  +Q   K +V   + +   + L L    P 
Sbjct: 68  EVKRIEVKHAQQGSANSSEGGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPS 127

Query: 114 WLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERVRYRSL--- 170
           WL+N+G  P+KLGLDL GGV FLL+VD+     A+       ++  LR++++R  S+   
Sbjct: 128 WLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRLFLREQQIRGASVRID 187

Query: 171 -PQQDGGIMLGFA-DDAT------REQARALIRKNFNDFDLTTTDRNELAVLRLALTQAK 222
             + D G+ +  A +DA       R   R  +++++  + LT  D      L + L Q +
Sbjct: 188 STRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQSYPTWQLTNADNG----LVVKLAQEE 243

Query: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282
             ++R  +++QNL  +R+R+ ELG+ E LVQRQG +RI +ELPGVQD A AK ++G TA+
Sbjct: 244 QIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATAS 303

Query: 283 LEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342
           L F    E G+  A  +V + + G     V R  ++ GD + DA+A+  E G  +VNI L
Sbjct: 304 LAFFEVKESGSVNA--QVLKDKSGN-PVYVARTPVLGGDHIVDARANIGEMGMAEVNIHL 360

Query: 343 DGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVEEKKIISLA 402
           D  GG+ MS  +R+N+G+ MA  + E      Y +   G  +         + ++IIS+A
Sbjct: 361 DRIGGQKMSEFSRANIGKPMATSYSE------YSRDEQGKAK---------QTQEIISVA 405

Query: 403 TIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDA 462
           TIQS LG +FRITG     E+ +LALLLRAG + AP+   EERTIGP+LGA+NI  G  A
Sbjct: 406 TIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAA 465

Query: 463 SLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLL-GATLTLPGIAGIVLTMGM 521
              GM    LF+   YR  G +A +AL  NMV+L  L++L+ GA LTLPGIAG+VLT+GM
Sbjct: 466 LGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGM 525

Query: 522 AVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVK 581
           AVD NVLIF RI++++  G S   AI  GF+ A+S I DAN TT++   +L+++G GP++
Sbjct: 526 AVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQ 585

Query: 582 GFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKK 617
           GFA+T+ LG+ TSMFT +  +RAL+NL   GRD ++
Sbjct: 586 GFALTLGLGLLTSMFTGIFASRALINLVY-GRDARR 620