Pairwise Alignments

Query, 672 a.a., cytochrome bo terminal oxidase subunit I from Pseudomonas putida KT2440

Subject, 541 a.a., cytochrome c oxidase subunit I from Rhodopseudomonas palustris CGA009

 Score =  408 bits (1048), Expect = e-118
 Identities = 218/522 (41%), Positives = 317/522 (60%), Gaps = 17/522 (3%)

Query: 45  WSEWLTTVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYLPPEHYDQIFT 104
           W  +L + +HK IG MY++ A++  + G A +I +R +L     G + +     Y+   T
Sbjct: 26  WRRYLYSTNHKDIGTMYLVFAVMAGVIGAAMSIAIRVELMFP--GIQIFHNTHTYNVFVT 83

Query: 105 AHGVIMIIFMAMP-FFTGLMNLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGV- 162
           +HG+IMI FM MP    G  N  VPL IGA D+AFP +N++SF+LL A   L+ IS  V 
Sbjct: 84  SHGLIMIFFMVMPAMIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPAAFALLIISTFVE 143

Query: 163 GEFAKTG----WVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAP 218
           GE +  G    W  Y PL+ I + PG  VD+ I AL L+G  + L  +NF+ T+  MRAP
Sbjct: 144 GEPSSNGVGAGWTMYAPLSTIGH-PGPAVDFAILALHLAGASSILGAINFITTIFNMRAP 202

Query: 219 GMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVNL 278
           GM L  MP+F W+      L++ S P+L  A+ +L  DR      F+ E GG+P+++ +L
Sbjct: 203 GMTLHKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFGTTFFSAEGGGDPLLFQHL 262

Query: 279 FWAWGHPEVYILILPAFGVFSEVTSTFSGKRLFGHHSMIYASGAIAILGFAVWLHHFFTM 338
           FW +GHPEVYILILP FG+ S++ STFS K +FG+  M YA  AI ++GF VW HH +T+
Sbjct: 263 FWFFGHPEVYILILPGFGMISQIVSTFSKKPVFGYLGMAYAMVAIGVIGFVVWAHHMYTV 322

Query: 339 GAGASVNTFFGLATMLISIPTGVKLFNWLFTMYQGRVRFTAPMLWTLGFMVTFSIGGMTG 398
           G  ++   +F  ATM+I++PTGVK+F+W+ TM+ G + F  PMLW +GF+  F++GG+TG
Sbjct: 323 GMSSTTQAYFVAATMVIAVPTGVKVFSWIATMWGGSIEFKTPMLWAVGFIFLFTVGGVTG 382

Query: 399 VLLAVPGADFVLHNSLFVIAHFHNVIIGGAVFGYIAGFAFWFPKAFGFTLNEKWGKAAFW 458
           V+LA  G D VL ++ +V+AHFH V+  GAVF   AG+ +WFPK  G+  NE  GK  FW
Sbjct: 383 VVLANAGVDRVLQDTYYVVAHFHYVLSLGAVFAIFAGWYYWFPKMTGYMYNETIGKLHFW 442

Query: 459 FWLSGFYVAFMPLYALGFMGMTRRLNHSDNP-LWEPYLYVAVVGAVLILFGIACQLIQIV 517
               G  + F P + LG  GM RR  + D P  +  +  V+ +G+ +  F +   L  + 
Sbjct: 443 LTFIGVNMVFFPQHFLGLSGMPRR--YVDYPDAFAGWNLVSSIGSYISGFAVLVFLYGMT 500

Query: 518 VSVRDRNQNLDVTGDPW--GGRTLEWSTSSPPPFYNFAHMPE 557
           ++   + +  D   +PW  G  TLEW+ SSPPPF+ F  +P+
Sbjct: 501 LAFIRKERAAD---NPWGAGATTLEWTLSSPPPFHQFEVLPQ 539