Pairwise Alignments

Query, 518 a.a., DNA-binding transcriptional dual regulator (NO) from Pseudomonas putida KT2440

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  243 bits (620), Expect = 1e-68
 Identities = 152/380 (40%), Positives = 226/380 (59%), Gaps = 38/380 (10%)

Query: 146 LDALQAFA-----------SLAAATVTVAERIEHLALRAEDEHHRAELYRQASGQDRELI 194
           +DA+QA A           SL  A   VA+ I   AL+ ++    +EL +Q       L+
Sbjct: 93  VDAMQAGADDYLAKPYQRQSLLLAIEKVAKSI---ALKRQNRRLSSELSQQQELVG--LV 147

Query: 195 GQSPAHKRLVEEIRLVGSSDLTVLITGETGVGKELVAQALHRASSRADKPLVSLNCAALP 254
           G+S   +++ + ++ V ++D TVLI GE+G GKEL A+AL++ S+R+ KP V++NC A+P
Sbjct: 148 GRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARALYQLSARSHKPFVAINCGAIP 207

Query: 255 DTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDEVGELPLTVQAKLLRVLQSGQL 314
           ++L E+ELFG  +GA+TGA+ ++ GK E A+GGT+FLDE+GELPL  Q KLLR LQ G +
Sbjct: 208 ESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDEIGELPLLQQTKLLRFLQEGVI 267

Query: 315 QRLGSDREHRVDVRLIAATNRDLAAEVRTGNFRADFYHRLSVYPLHVPPLRERGRDVLLL 374
            RLG + E ++DVR+IAAT+RDL  EV  G FR D Y+RL+V P+H+P LRER  D+  L
Sbjct: 268 SRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYRLNVVPIHMPALRERPEDIGRL 327

Query: 375 AGYFLEQNRSRLGLNSLRLSHEAQAALIAYDWPGNVRELEHLIGRSALKALGQHPDRPRI 434
             +FL+ + ++ G+   +LS +   +L+ + WPGNVREL + I R  L  LG   +  + 
Sbjct: 328 VEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRELANRIERFVL--LGDEEEMVQE 385

Query: 435 LTLEAIDLDLRVSATTPGTLPSPAAPLQVVTPPEGGLREAVDSYQRQVIEACLQRHQDNW 494
           L                G  P P    + V  PE G+    +S+++  +   L R + N 
Sbjct: 386 L----------------GAAPQPLDTKRFVL-PEAGIE--WESFEKDCLRQALDRFEGNR 426

Query: 495 AAAARELGLD-RANLSRLAR 513
             AA+ LGL  +A L RL +
Sbjct: 427 TKAAKCLGLSYKAFLYRLEK 446