Pairwise Alignments

Query, 518 a.a., DNA-binding transcriptional dual regulator (NO) from Pseudomonas putida KT2440

Subject, 471 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  248 bits (634), Expect = 3e-70
 Identities = 159/417 (38%), Positives = 236/417 (56%), Gaps = 36/417 (8%)

Query: 121 LMVDERPWGLV--TLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDEHH 178
           L+ D R  GL   TL      Q  +L +  L AF S+  A   + +       +  D+ H
Sbjct: 59  LITDLRMPGLSGQTLMREALAQDPALTVIMLTAFGSVETAVAALKQGAYDFLTKPIDQEH 118

Query: 179 ----------RAELYRQASGQDRE----------LIGQSPAHKRLVEEIRLVGSSDLTVL 218
                     R  L R+ +G+ R+          LIG+SPA +RL + I  V +SD TVL
Sbjct: 119 LFRVVGKAMERGVLLRE-NGRLRQKAADGDLGPMLIGKSPAMQRLRKSIAAVAASDYTVL 177

Query: 219 ITGETGVGKELVAQALHRASSRADKPLVSLNCAALPDTLVESELFGHVRGAFTGAHGERR 278
           I GE+G GKELVA+A+   S RAD P + +NC A+PD L+ESELFGHV+GAFTGA   R+
Sbjct: 178 IRGESGTGKELVARAVQSLSQRADGPFIMVNCPAIPDALLESELFGHVKGAFTGADRNRK 237

Query: 279 GKFELANGGTLFLDEVGELPLTVQAKLLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLA 338
           G F  A+ GT+ LDE+G++P +VQ+KLLRV+Q G+++ +G++   RV+VR++A+TNR+L 
Sbjct: 238 GLFMAADKGTILLDEIGDIPASVQSKLLRVIQEGEVRPVGTNEAQRVNVRIVASTNRNLE 297

Query: 339 AEVRTGNFRADFYHRLSVYPLHVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQ 398
           A++  G+FR D Y RL+V  ++VPPLRER  D+  +A +FL +  + LG+     S+EA 
Sbjct: 298 AKIADGSFREDLYFRLNVLTINVPPLRERIEDIPHIASHFLFRVCNELGVPEKEFSNEAL 357

Query: 399 AALIAYDWPGNVRELEHLIGRSALKALGQHPDRPRILTLEAIDLDLRVSATTPGTLPSPA 458
           + L    WPGNVREL +L+ R A+   G+  +   I  +E              T P   
Sbjct: 358 SYLSCRPWPGNVRELLNLVRRMAVFCPGERIEGAFIHRME----------HGADTEPECG 407

Query: 459 APLQVVTPPEGGLREAVDSYQRQVIEACLQRHQDNWAAAARELGLDRANLSRLARRL 515
           A     +P +   + AVD + R  +   L+    N + AAR  G++R  L ++ +R+
Sbjct: 408 AGF---SPYKDAKQVAVDEFTRSYVHRLLEHTHGNISEAARLSGVERFTLQKILKRM 461